Protein Info for Rru_A2337 in Rhodospirillum rubrum S1H

Annotation: TonB-dependent receptor (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 741 PF07715: Plug" amino acids 87 to 193 (107 residues), 73.7 bits, see alignment E=1.7e-24 PF00593: TonB_dep_Rec_b-barrel" amino acids 289 to 705 (417 residues), 141.9 bits, see alignment E=5.8e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2337)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RRV8 at UniProt or InterPro

Protein Sequence (741 amino acids)

>Rru_A2337 TonB-dependent receptor (NCBI) (Rhodospirillum rubrum S1H)
MPSCYPVSSGRSDGHAEPHPLYRKPRTTGMVAMALSLGVSLQAGLASEAKAQQNQGGSAS
EDLVGTQGRAIALPTMTVTARRIEEDPKDIPFSVTVLDGKEIEQKGNYSLEEVLRSTPGV
SVNTSGGANVSSISIRGVGALYPLSMDDASVVVNLDGSPVNPRNLSLGILDLEQVEVLKG
PQGTLFGGLGGAGAINLTTRKPTRHVEGYVQGEYGEDHQHRMAAAVGGPLSEQFSGRLAV
QQSAYDYPITNRQTGEPLSEPDFLGVRGSLLWDIQPETSALFSVEYDHSRHMGENIVLKP
YGDDPEIDLTPGVYDYSKKNMKRYSLEVNHEFENSQITSVTSYSDTYNISPVFFDRMVYQ
SMMGVPSEYWRDQEVSENVFTQDLRVSSLPGANLFWVAGASALYSERGYDHPRVGGASGI
VYPGTSQYRDFTTQRYGVYGEVTVPVIEDLKVTAGVRHTLDLKTYDATYTARGVSVQDSG
DLSDNFTTGRLGVSYAVTPEANIYATFSRGYNPGGYQDYAETAGDAEYKAGSIYSGEVGM
KSEFLNKRLRLDASAFVTKVQDNYMIDSKGVSSFVLNADTRSVGGELAASWRVADALTLE
GGVSYISAVIQDDVNATQGGAVKAGNHVPDVPEWSGKVSAIFNKSLPRIGFLPSPELNAR
LDYTYVGERPADVQNHYDLDAYHKVDTRIGIAQSGVELYVWGRNLVGDHYDLYGFYDVAS
ATKYGAPAPGRAFGLGFSATF