Protein Info for Rru_A2209 in Rhodospirillum rubrum S1H

Annotation: AsmA (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1077 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05170: AsmA" amino acids 4 to 194 (191 residues), 88.6 bits, see alignment E=2.3e-29 amino acids 749 to 933 (185 residues), 31.1 bits, see alignment E=5.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2209)

Predicted SEED Role

"outer membrane assembly protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RS86 at UniProt or InterPro

Protein Sequence (1077 amino acids)

>Rru_A2209 AsmA (NCBI) (Rhodospirillum rubrum S1H)
MRTLLFGTVVLIALMVGTVLAVPSFVDWNLYRDRLSAEIQRITGRALVVEGDLSLHLLPT
PALAAQGVSLANAPGGSDPVMARVDSVQVKVDLLPLLHGEVVVRSVEIIRPVIVLERLAD
GRGNWEMRAGQGGGDEVDGRLPGAPPVESADPLEVAFNHVEIVDGVVRYRDGGTERVIDN
LDVTLVADRLNGPFSLQGRATALGLPVSLQAMIGAIDAGRATQVGIKLGLENQPSVFELT
GLVSGLSTGPTLRGSMGLAVDDPAAALDRLGAAMGRDLGLSAGPMKLPLRVNSRIELSSA
AAKFDDMVVQLAGNEVKGGASAVFGAVPRIDAAFVASRIDLEAWKTAWSDQPGGSPAALA
VAHAEEKPPAWRFPQDLAVTLDLAVDAAIYNGSALRDLRLSAALSKGEVTINQLSARLPG
VSDVSAFGFLTTPTEGLAIDLTLAGRSDNLRALLDWLKVDVGGVPGDRLRRFDGQATVVG
TAAQVKITGLDVSLDTSQIRGAFTLRPGKRPGIGATVMVDRLDLDAYRSEAAQATGDPLP
LLAGFERLNAFDTSFDFKAGAVTLGGESYGGIAVKGSLVKGKLTLAEATVADGPGGMRLG
LGGAVSGFGGAPGFDNLTYDIEIPDPARVVRALRLDLPLAIESIDKLVLTGTVNGTANAL
TLRTTTTGDGATLNTEGTLVGAFAGVPTLSMGIGFAHPDAASFLAMVFPGYRAQGLPGAL
RLQGQLAGDLSTMALSDIQATVGAVPLSGSIAVNRKGDRPFVEADLQAGDLDLDPLLPAS
RLSALERPRAVRAAGLMLGGGSVAPPSLLPLRRVATSEGAVASPPDKEALADVDGALALR
ATSLTYAGLRLEQASLRAKLVDGVVTLSPVEGTLYGGRLKATAQRTPGPMAAYTLGLTLD
GFKAGDYLAARGMAGGSGSGSLVLDLAARGEEDLVSTLSGKGVLSLTAIDVSDPSAPGRG
LARLAGLLGGLGDLAGPKGAVGGPTPGAALDLNGPFSLEKGVVSFEAISLRAADFSASLS
GRLDLGRDSIDAQGRVALSPEARAALAKDIALPDDIPFGIRGPLAKPVVRVLTPPLR