Protein Info for Rru_A1459 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 49 to 68 (20 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 346 to 368 (23 residues), see Phobius details amino acids 374 to 394 (21 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 362 (344 residues), 121.2 bits, see alignment E=2.4e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1459)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RUD5 at UniProt or InterPro

Protein Sequence (429 amino acids)

>Rru_A1459 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MAFPSLSAPALRRGVTLLMAGLVVQAMGHSFVLIVLPALGRQMGIADVRIGLILSLSALV
LSLSAPLWGMIGDTWGRRRVILIALAAAAAFPALLALLLYGRLSLGVSATATFAMLLALR
LVLAALGGGLMPAAQAYLADVTSREGRARGMGGMGAAFGLGGLAGAGLAFALGGRGWMPA
LGLLSGVAALVVILVWRGLSEPPRAVLPQTSGAVRLRPLAPFLGITISGLAVYSLIGQVT
VLRLQDGFGLSLEASIGTAGGLMMLTMLAMITAQGLIVPRLARTPGTLLRVGSVVALLAG
LLALAAPQVAVLGVAMAGLGAGLGLTLPGNLTALSLRGGPGVQARVAGINALAQGAGLAL
GPLLGAGLHQISPVAPYGAATGFLLGVGVLAWGATRGGCSPDALARSPADRPQGRAAHTE
ALPSKETAS