Protein Info for Rru_A1420 in Rhodospirillum rubrum S1H

Annotation: NADH dehydrogenase (quinone) (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1265 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 33 to 53 (21 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details amino acids 137 to 156 (20 residues), see Phobius details amino acids 177 to 199 (23 residues), see Phobius details amino acids 228 to 246 (19 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 310 to 327 (18 residues), see Phobius details amino acids 333 to 350 (18 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 403 to 426 (24 residues), see Phobius details amino acids 447 to 469 (23 residues), see Phobius details amino acids 474 to 497 (24 residues), see Phobius details amino acids 510 to 538 (29 residues), see Phobius details amino acids 544 to 563 (20 residues), see Phobius details amino acids 575 to 595 (21 residues), see Phobius details amino acids 605 to 633 (29 residues), see Phobius details amino acids 654 to 673 (20 residues), see Phobius details amino acids 706 to 723 (18 residues), see Phobius details amino acids 730 to 750 (21 residues), see Phobius details amino acids 756 to 776 (21 residues), see Phobius details amino acids 788 to 805 (18 residues), see Phobius details amino acids 811 to 829 (19 residues), see Phobius details amino acids 842 to 862 (21 residues), see Phobius details amino acids 878 to 899 (22 residues), see Phobius details amino acids 935 to 957 (23 residues), see Phobius details amino acids 963 to 982 (20 residues), see Phobius details amino acids 995 to 1017 (23 residues), see Phobius details amino acids 1028 to 1046 (19 residues), see Phobius details amino acids 1058 to 1076 (19 residues), see Phobius details amino acids 1095 to 1116 (22 residues), see Phobius details amino acids 1137 to 1161 (25 residues), see Phobius details amino acids 1189 to 1209 (21 residues), see Phobius details PF00361: Proton_antipo_M" amino acids 7 to 150 (144 residues), 69 bits, see alignment E=6.1e-23 amino acids 328 to 627 (300 residues), 179.7 bits, see alignment E=1.2e-56 amino acids 805 to 1108 (304 residues), 165.9 bits, see alignment E=1.9e-52 PF00662: Proton_antipo_N" amino acids 752 to 789 (38 residues), 29.7 bits, see alignment (E = 7.1e-11)

Best Hits

KEGG orthology group: K05903, NADH dehydrogenase (quinone) [EC: 1.6.99.5] (inferred from 100% identity to rru:Rru_A1420)

MetaCyc: 100% identical to CooM subunit (Rhodospirillum rubrum)
Ferredoxin hydrogenase. [EC: 1.12.7.2]

Predicted SEED Role

"Carbon monoxide-induced hydrogenase membrane protein CooM" in subsystem Carbon monoxide induced hydrogenase

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.12.7.2, 1.6.99.5

Use Curated BLAST to search for 1.12.7.2 or 1.6.99.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RUH4 at UniProt or InterPro

Protein Sequence (1265 amino acids)

>Rru_A1420 NADH dehydrogenase (quinone) (NCBI) (Rhodospirillum rubrum S1H)
MADISALAWAGAALMLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGTAAGETGAV
MHLGYQAIMRALVVVAAWHLIRRSGSSKLDALVGSVERMPFVSLMFGFGLFSVMGLSPFK
GSFSKFVILYAAIENGYWGLAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGDKPIPFF
QIPVGQLPIVVLALVTVVMSLDPDPFLMLAANAVGLPDHHGLPEFETIWDAPVLLPYVGG
FALFLFGRFSAQARAVGAIALATATLALVAARLESGDLGGLFALIFAAIGLAVTVYSVGY
MKHGHGVNRYFFFLFLMIGSLIGVATTNHLGNFYLFWELMTWMSYLLVIHEQTAKALKAG
MKYFLICASGAYVMHFGILVLHAQLGTFEISEIAPCIGTLSPALAGVVLATFLIGFMAKA
GLFPLYSWLPEAHPVAPSSISGPMSGILTKAGILGMVKLLFGIFGVGALGQFGLFAGLSL
PGAVLVALGGITLLLGEVQAYRQTDIKRLLAYSTLAQIGEITMVLGVGTSLALAGGLFHV
TNHAVMKTMLFFAVGALILRSAGRSLDDLKGLGKVMPFTGLCLGIGLLAIMGVPPFGGFV
SKFLMIYACVEAGQVGVAAVILVGSVIGALYYARVLRAVFFEPYTGPKVVEAPLTMRIAL
GALAGVVVFTGVYPDAALSVVMPVVETLSARGGLPLAALPPLRMEWSLAALIAVVGAVVV
YILGKRSTVVAGSLSVAVMALALAGILIQSGRYDLLSFWFAALIVVVGAINLLYSIGYMA
HGHAQNRFFFFFVMMIGGLLGVTASDDLFNFFAFWEVMSSWTLYLVIIHEETKDSLDEGT
KYFIFNFVGASFLFLGVAILAAKAGTFEMALLPQAALSMPVGWLAVSAGLILAGLLMKAA
QLPLRIDYQMHPAPAPTPVSGYISAVLLKVGPYGVLKIMVALGAGGGLARIAGLGAWMPD
PLVVVQVIAALTVLYAGAMAVVQNGVKRLLIYSTVSQLGYVLLGLSLGSALGVAGGLMHF
VNHMMLKDILFLAAGCILAQAHVHSLDDLGGLGRKMPITFGLFLFAGLSLSGIPPFNGFA
SKWLIYQGAFQGGHYLLAMAALMSSLFTLAAVLKFTHSAFLGPLSPAAATMREAPPVMLI
PMGLLAAGSVIVGVFPGVALVPISRIQAALGLPVIEASWLGGLPGPGGWHPLTLTLALGA
VGLIGWLYCRDGYRHRAASTTHSCGVSDIAASAMHVPASGLYETPDRLIRKVLFAKTSPE
GRAHD