Protein Info for Rru_A1285 in Rhodospirillum rubrum S1H

Annotation: WD-40 repeat (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1491 transmembrane" amino acids 203 to 216 (14 residues), see Phobius details amino acids 705 to 727 (23 residues), see Phobius details PF13365: Trypsin_2" amino acids 24 to 189 (166 residues), 31.7 bits, see alignment E=1.4e-10 PF20703: nSTAND1" amino acids 219 to 638 (420 residues), 210.1 bits, see alignment E=4.6e-65 PF00400: WD40" amino acids 802 to 832 (31 residues), 17.6 bits, see alignment (E = 2.5e-06) amino acids 843 to 875 (33 residues), 23.7 bits, see alignment (E = 3e-08) amino acids 898 to 922 (25 residues), 18.6 bits, see alignment (E = 1.3e-06) amino acids 936 to 965 (30 residues), 24.1 bits, see alignment (E = 2.3e-08) amino acids 976 to 1008 (33 residues), 32.5 bits, see alignment (E = 5.1e-11) amino acids 1019 to 1050 (32 residues), 21.8 bits, see alignment (E = 1.2e-07) amino acids 1060 to 1093 (34 residues), 35.1 bits, see alignment (E = 7.7e-12) amino acids 1104 to 1135 (32 residues), 19.3 bits, see alignment (E = 7.7e-07) amino acids 1147 to 1179 (33 residues), 31.2 bits, see alignment (E = 1.3e-10) amino acids 1190 to 1222 (33 residues), 30.3 bits, see alignment (E = 2.4e-10) amino acids 1232 to 1265 (34 residues), 30.1 bits, see alignment (E = 2.9e-10) amino acids 1371 to 1395 (25 residues), 26.8 bits, see alignment (E = 3.1e-09)

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1285)

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RUV9 at UniProt or InterPro

Protein Sequence (1491 amino acids)

>Rru_A1285 WD-40 repeat (NCBI) (Rhodospirillum rubrum S1H)
MMDPLQGCLLRLLRSDGESDIIVGTGFLSLGADGRPYVLTCAHVVNAALGRDKTETSHPG
SCVVMANQQGGKPIPLDLQAWNAPISGASGNSDIADIAILTPLQSLSASWLPRLRAEPPS
RVVPHNSKVPFHSFGFMVTSDGNPARGSLTAVDFANRFVAHGDHTFRRFIEEGLSGAPVF
SDDSRVLGMVARRLAVEDKQGLVISAFALAQAWPLLAMPYPGLPSFEASNAHLFFGRGRP
VNGEVPTGKLKELLERLQKQRLVALVGASGSGKSSLANAGVAEYYRQRNWRVVSFRPGLA
PLRNLSEAIFEVIEEGETVLSRLQTVSYWESLLKRGMLRDAFDCINRAGADGTLVIVDQF
EEFFPGREASSYDNGDLSVDLDPIAQERSLILKQLRQAEDRADVHCLLTVRLDLLESIIK
GGKDAARLLSDPYPIFMLTAMTASEVREAIVGPAQVFGVETDTNFATNLAAEVTKGEGRL
PLLQEALRQCWARIRFGEQGWNLYQPEDLSEGKEILLLEESVGRRGDEAMGEIERHYKPV
EVNRMLLSLVRWVDGRPLRRILSMMESDESDVPMIAMLANQRLVILSGDGSRRTAELVHE
ALMTRWARLASLISNHHVFLEWRDRFDREFIVWERGRCEEKDLLRRHDVQLAMSWKENVD
GFFIAPTSRQLKFIDESYLFYEKEEIRREEDFRQKEKQNRRIRKWLLLSIFALFLFFIFL
CLSIFTFKKAQDETYSAQMQESRALAVLARQESEKGDQGTAILLALEGLPDPGFGGKRPL
SPEAATMLRQAWLRNREVTTVGYDGPVRVASLSSDGQRVVVASDDEIVRVWDLSAPKSPG
INLGEHQGSVFSANLSPDGQRAVTASYDGIVLVWDLSAPKFPAITLAGSSGSVLSGRESV
SFSPDGQRVLKTSEDGTAQVWDLSSSKIQAITLGERGHYVQSASFSPDGRRVVTASSDGA
AQVWDLSAPKTQAILLEGHEQPVQSASFSPDGQKVVTVSSDGTARVWNLSEPKPQALLLD
GHKGLVQLASFSPDGQHVVTASGDTARVWDLSAPKSQAFLLEGHEGSIQSASFSPDGRRV
VTGSGEGTVRVWDLSAPKSQPILLRGHLRATFFARFSADGRSVVTASYDGTARVWAVPAV
EPGELFLEGSDDSVRSASFSPDGEHLVTISDDKTVRVWDLSVPKPRSLLLEGYEGSVQSA
SFSPDGQRLVTVSDDKTARVWDLAEPKAKALILEGDDASVGSASFSPDGRRVVTASYDKT
ARVWDLSALKPRAITLESSLGWVGSANFSPDGQRVVGASYGGAQIWDLSVPERPKLCMRL
KQLNAGLLQSASFSPDGGRVVTVSDGGTRVVDLSTPKSPPITLGGRLDRARSASFSPDGQ
RVLTASYDGTARVWDLAGSQASALVLGEYSSSMLYANFSRDGRRVLTFSSPNKLRVWDVY
PDIRELSSLVRKRLTRCLSTAQREEFGLRVEDRKRNRDAIPIPDSEGNCPR