Protein Info for Rru_A1260 in Rhodospirillum rubrum S1H

Annotation: ABC transporter component (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF00005: ABC_tran" amino acids 21 to 162 (142 residues), 114.1 bits, see alignment E=1.2e-36 PF17912: OB_MalK" amino acids 238 to 290 (53 residues), 44.3 bits, see alignment 4.1e-15 PF08402: TOBE_2" amino acids 283 to 359 (77 residues), 30.9 bits, see alignment E=3.6e-11

Best Hits

KEGG orthology group: K10112, maltose/maltodextrin transport system ATP-binding protein (inferred from 100% identity to rru:Rru_A1260)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RUY4 at UniProt or InterPro

Protein Sequence (372 amino acids)

>Rru_A1260 ABC transporter component (NCBI) (Rhodospirillum rubrum S1H)
MASIDLRNLSKAYGPTPPVVRAINLEIADGEFMIFLGPSGCGKSTTLRMIAGLETVTSGE
VRIDGAVVNDLDPAKRDLAIVFQNYALYPHMSVRKNLAFGLRLRHIPEAEITRRIQDVGE
ILGLSQLLDRRPAHLSGGQRQRVALGRALVREPKAFLLDEPLSNLDAKLRASMRTELIKL
HRRLGTTMIHVTHDQVEAMTMGQRICIMRDGEIMQVGAPLEVYRNPANLFVADFLATPPM
NLLPGRLEAVGEDLVAVAGALRLPIPPAYRPAYAPLSGREVVLGLRPEDFHPDARRAGPL
AAGLSLTVETVEALGPEQILVSRVDGCAKDIAVRTESALAIRPGARLDLSYDTTKIHLFD
PTTTLCLTRPAL