Protein Info for Rru_A1210 in Rhodospirillum rubrum S1H

Annotation: Malate dehydrogenase, NAD-dependent (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR01763: malate dehydrogenase, NAD-dependent
  • amino acids 3 to 307 (305 residues), 428.9 bits, E=5.3e-133
• PF00056: Ldh_1_N
  • amino acids 5 to 143 (139 residues), 141.9 bits, E=2.3e-45
• PF02866: Ldh_1_C
  • amino acids 148 to 307 (160 residues), 119 bits, E=3.4e-38

Best Hits

Swiss-Prot: 100% identical to MDH_RHORT: Malate dehydrogenase (mdh) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)

KEGG orthology group: K00024, malate dehydrogenase [EC: 1.1.1.37] (inferred from 100% identity to rru:Rru_A1210)

MetaCyc: 75% identical to malate dehydrogenase subunit (Methylorubrum extorquens AM1)
Malate dehydrogenase. [EC: 1.1.1.37, 1.1.1.38]

Predicted SEED Role

"Malate dehydrogenase (EC 1.1.1.37)" in subsystem Serine-glyoxylate cycle or TCA Cycle (EC 1.1.1.37)

MetaCyc Pathways

• superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle (20/22 steps found)
• TCA cycle V (2-oxoglutarate synthase) (9/9 steps found)
• anaerobic energy metabolism (invertebrates, cytosol) (7/7 steps found)
• TCA cycle I (prokaryotic) (9/10 steps found)
• TCA cycle III (animals) (9/10 steps found)
• superpathway of anaerobic energy metabolism (invertebrates) (14/17 steps found)
• TCA cycle VIII (Chlamydia) (6/6 steps found)
• TCA cycle II (plants and fungi) (8/9 steps found)
• TCA cycle IV (2-oxoglutarate decarboxylase) (8/9 steps found)
• gluconeogenesis III (10/12 steps found)
• methylaspartate cycle (15/19 steps found)
• superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass (20/26 steps found)
• reductive TCA cycle I (9/11 steps found)
• incomplete reductive TCA cycle (6/7 steps found)
• (S)-lactate fermentation to propanoate, acetate and hydrogen (10/13 steps found)
• gluconeogenesis I (10/13 steps found)
• malate/L-aspartate shuttle pathway (2/2 steps found)
• superpathway of glyoxylate bypass and TCA (9/12 steps found)
• pyruvate fermentation to propanoate I (5/7 steps found)
• anaerobic energy metabolism (invertebrates, mitochondrial) (7/10 steps found)
• glyoxylate cycle (4/6 steps found)
• mixed acid fermentation (11/16 steps found)
• reductive TCA cycle II (8/12 steps found)
• superpathway of glyoxylate cycle and fatty acid degradation (9/14 steps found)
• chitin deacetylation (1/4 steps found)
• C4 photosynthetic carbon assimilation cycle, NAD-ME type (6/11 steps found)
• methylgallate degradation (2/6 steps found)
• protocatechuate degradation I (meta-cleavage pathway) (3/8 steps found)
• L-glutamate degradation VIII (to propanoate) (5/11 steps found)
• formaldehyde assimilation I (serine pathway) (6/13 steps found)
• superpathway of vanillin and vanillate degradation (3/10 steps found)
• syringate degradation (3/12 steps found)
• Methanobacterium thermoautotrophicum biosynthetic metabolism (21/56 steps found)

KEGG Metabolic Maps

• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from terpenoid and polyketide
• Biosynthesis of phenylpropanoids
• Biosynthesis of plant hormones
• Biosynthesis of terpenoids and steroids
• Carbon fixation in photosynthetic organisms
• Citrate cycle (TCA cycle)
• Glyoxylate and dicarboxylate metabolism
• Pyruvate metabolism
• Reductive carboxylate cycle (CO2 fixation)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.37 or 1.1.1.38

Sequence Analysis Tools

See Q2RV34 at UniProt or InterPro

Protein Sequence (318 amino acids)

>Rru_A1210 Malate dehydrogenase, NAD-dependent (NCBI) (Rhodospirillum rubrum S1H)
MARKKIALVGAGNIGGTLAHLIGLKELGDVVLFDIAEGTPQGKALDIAESTPIEGVDASY
SGSNDYAAIKDADVVIVTAGVPRKPGMSRDDLIGINAKVMSAVGQGIRANCPNAFVICIT
NPLDAMVWVLREVSGLPHNKVVGMAGVLDSARFRYFLSEEFNVSVKDVNAFVLGGHGDTM
VPLPRYSTVAGIPLPDLVKMGWTTQEKLDQIIQRTRDGGAEIVGLLKTGSAFYAPAAAAV
QMAEAYLKDQKRVLPCAAWVEGQYGLDGIYVGVPTIIGAGGIEKVIEIELNADEKAAFAK
SVDSVRGLIAASKELMPK