Protein Info for Rru_A1208 in Rhodospirillum rubrum S1H

Annotation: AFG1-like ATPase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 PF03969: AFG1_ATPase" amino acids 4 to 379 (376 residues), 339 bits, see alignment E=1.6e-105

Best Hits

KEGG orthology group: K06916, (no description) (inferred from 100% identity to rru:Rru_A1208)

Predicted SEED Role

"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RV36 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Rru_A1208 AFG1-like ATPase (NCBI) (Rhodospirillum rubrum S1H)
MSQTPFGVYRQRLAEGGLIGDPAQEKALEHLDALFAEVLAYRLPPPPAERSAGWGARLGF
GRERERVAPAGPKGLYIFGEVGRGKSMLMDLFHGCLPEGRGRRLHFHGFMREAHATLHGW
RSQAQGRASEGGDPIPRLARALTQGRAVLCLDEMDIQDIGDAMIVGRLFKEINDLGVVVV
TTSNRAPDDLYKHGLQREKFLPFIALIKQRLGLVELAGPRDYRLDRMKGMTVYFTPTGAA
ADDWLGRCLTRLAGEETPAPEVVTVHGRAVPVRAATRQVGCFSFGDLCAKPLGSHDYLAI
AERFDTVLISDIPRLGPRNADEVRRFVVLIDALYDHKTALICSAEAPPQRLYDDGPGAFE
FQRTVSRLMEMQSEAYLAQAHV