Protein Info for Rru_A1197 in Rhodospirillum rubrum S1H

Annotation: chemotaxis sensory transducer (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 688 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 313 to 336 (24 residues), see Phobius details PF00672: HAMP" amino acids 336 to 385 (50 residues), 28.3 bits, see alignment 1.8e-10 PF00015: MCPsignal" amino acids 500 to 651 (152 residues), 101.6 bits, see alignment E=4.7e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1197)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RV47 at UniProt or InterPro

Protein Sequence (688 amino acids)

>Rru_A1197 chemotaxis sensory transducer (NCBI) (Rhodospirillum rubrum S1H)
MSIKRFMMMCFFSISIILIVMAFLLFRTSWQESHRAKDAGDLVELLGAATLISETLAPER
GASSVSLDGGPEARKTLLTTRERLNQTFDRVESTLRASPSDDGRRALQTITKVRADLAEW
RQKVDATTDGDPQRIVAFRKELIAGMLGLLTEVSKLTSALEHQLGLTDAEVTVPAALALI
TGQLRDNAGRQSTLHLDAVVGKKPFTPTQLAQMSLLDGRIQLLWEQLTRAGTADDSSPRL
RAAVEAVDAQFVKPFAAARARVTAHAGDGAYDLEGAEWRKMTAPMLQSIMLVRDAAIDDA
RQLVDEKIAKASFALWELSGLLGLAVGIVAVIIIVTGRRVTAPLDHLTATIVDFAQGARE
FAVPHTDRRDEIGRMAKALEVLRGNALAADTQAKHAEDERLARDQRRQKTEVVTSEFVGS
IDGVVAGVTRAAEQLRAETKSLLQTSELSSRQSEVVATASEDASANVQTVAAAAEELSNS
IQEISRRVAETAATTDGAVQQAESTNAMVRSLTEAVRKIGDVVKLISDIASQTNLLALNA
TIEAARAGDAGKGFAVVAGEVKTLANQTAKATEDIQSQVAAIQVETERATTAIGAITATI
AAVNQHTIGIAAAVEQQGAATTEIARNVQQAANGTAEVSSSIGKVLEAAHQTGAAATKLS
KLADSLAGDSTLLDQTVGGFVTQIRVAG