Protein Info for Rru_A1144 in Rhodospirillum rubrum S1H

Annotation: Benzoate membrane transport protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 100 to 118 (19 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 252 to 282 (31 residues), see Phobius details amino acids 294 to 319 (26 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 366 to 388 (23 residues), see Phobius details TIGR00843: benzoate transporter" amino acids 7 to 388 (382 residues), 390.9 bits, see alignment E=3.1e-121 PF03594: BenE" amino acids 17 to 386 (370 residues), 433.7 bits, see alignment E=2.9e-134

Best Hits

Swiss-Prot: 43% identical to BENE_ACIAD: Benzoate membrane transport protein (benE) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 100% identity to rru:Rru_A1144)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RVA0 at UniProt or InterPro

Protein Sequence (408 amino acids)

>Rru_A1144 Benzoate membrane transport protein (NCBI) (Rhodospirillum rubrum S1H)
MPSSSASLRLNDLTHPIVAGLISVIVNYGGTFILVFQAAQVAGLDPDVTVSWVWSVSIGV
GVTGLFLSWRYREPIITAWSTPAAAFLVTALATTPYAEAVGAYMISAAAFVALGLSGYFE
KVIGLIPPGIASGLLAGILLQFGIGAFGGASVDPLLVGLLIVAYVALKRVSARYAVVGIL
LLGLAFLLMQGRVDLSGLTLEFAAPVFTMPEFSVNALLSVALPLFLITLTGQYMPGMLVL
RNDGFKTSANPIVTVTGLGSLLMAPFGSHAFNIAAITAAIATGREAHEDPSKRWIAGIAA
GFFYGLVGVFGVTLAAVFMAFPATFITALAGLALLGTIGGSLAAAMADPTSREAALITFL
ASAANIKLLGIGGAFWGLLIGLVAYLVLNGRLPRREPADLPVSEGAAK