Protein Info for Rru_A1114 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 215 to 234 (20 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 285 to 308 (24 residues), see Phobius details amino acids 314 to 337 (24 residues), see Phobius details amino acids 347 to 366 (20 residues), see Phobius details amino acids 379 to 402 (24 residues), see Phobius details amino acids 416 to 441 (26 residues), see Phobius details amino acids 457 to 480 (24 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 428 (397 residues), 154.8 bits, see alignment E=1.5e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1114)

Predicted SEED Role

"Putative transmembrane efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RVD0 at UniProt or InterPro

Protein Sequence (486 amino acids)

>Rru_A1114 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MSDTCVSRSEAPSSPSRLGGASAQSPLALAILLLGGFITVFDLFVVNIAIPSMQRDLGAT
FAEIGFVIAGYELAFGVLLIAGGRLGDIHGRRRLFAFGLLGFGLTSLLCGIAPNAASLIV
ARFLQGAAGAILFPQVYALLRVMYDDAGRRRAFGLLGMTLGMAAIAGQVLGGLIVESDLF
GLGWRIIFLINLPISLGAALCVHTLPDSKAPGASVVDWPGVGLATAGLLLLLVPLLEGPN
SGWPAWTWASFAASAALLAAFLAWERRAAHSAIDLGLFARRGFSIGAVVVLLIYSTATSL
FLCFALLLQSGLGLTPFAAGALFAPASVGFVAASLLAPKLVSRWGNAAIWGGALIYAAGI
AWLIAMTSRLTGKEDALSLLPALILFGFGQGLSMTPLLNLVIGFVEDRHAGMAAGIIATM
QQVGGAFGVSIVGIFFVSLLSGPSNGAEPDPSRYGAAFSGAMLYNVAAALLASALIAWIA
RKKAAR