Protein Info for Rru_A1042 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 93 PF10073: GapR_DNA-bd" amino acids 21 to 92 (72 residues), 114.5 bits, see alignment E=6.8e-38

Best Hits

Swiss-Prot: 69% identical to Y2034_PARL1: UPF0335 protein Plav_2034 (Plav_2034) from Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1042)

Predicted SEED Role

"conserved hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RVK2 at UniProt or InterPro

Protein Sequence (93 amino acids)

>Rru_A1042 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MDVLEDEVPVGGVAQDIGGVAADQLRSIVERIERLEEEKANIANDIKEVYSEAKGNGFDA
KIIRKVVALRKKDKHDLAEEEELLALYRAAVGV