Protein Info for Rru_A1030 in Rhodospirillum rubrum S1H

Annotation: Amino acid permease-associated region (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 88 to 115 (28 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 153 to 176 (24 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 398 to 419 (22 residues), see Phobius details amino acids 425 to 442 (18 residues), see Phobius details TIGR00908: ethanolamine permease" amino acids 6 to 450 (445 residues), 612.9 bits, see alignment E=1.7e-188 PF13520: AA_permease_2" amino acids 14 to 418 (405 residues), 109.7 bits, see alignment E=1.8e-35 PF00324: AA_permease" amino acids 21 to 426 (406 residues), 108.8 bits, see alignment E=3e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1030)

Predicted SEED Role

"Ethanolamine permease" in subsystem Ethanolamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RVL4 at UniProt or InterPro

Protein Sequence (474 amino acids)

>Rru_A1030 Amino acid permease-associated region (NCBI) (Rhodospirillum rubrum S1H)
MTLSIKPTLKKSLSGLHLWGIAVGLVISGEYFGWSYGWDQAGTLGFLVTTILIAVMYTTF
IFSFTELTTAIPHAGGPFAYSYRAFGPLGGFLAGFATLIEFVFAPPAISLAIGAYLNVQF
PGLDPKLAAVGAYVVFMALNIAGVTIAATFELLVTVLAIAELLVFMGVVSPGFSFTNFVA
NGWSGESGFSFGSLSGIFAAIPFAIWFFLAIEGAAMAAEETKDPRTTVPKAYIAGILTLV
FLAFGTMIFAGGVGDWKALSNINDPLPQAMKVVVGESSGWLHMLVWIGLFGLIASFHGII
MGYSRQIFALARAGFLPAVFSTVHPSRKTPHWAILAGGVIGIAAIFSDSFISIGGLPLTA
NIVTMSVFGAIVMYIMSMAALFRLRQSEPALDRPFRAPFYPVFPAIALAMAVVALITMIY
FNPMVFGLFVGLMAAGWLFYRFTAHLRAAAPGDGLLSVGGIETIAQTEARSLVD