Protein Info for Rru_A1013 in Rhodospirillum rubrum S1H

Annotation: ABC transporter component (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 PF00005: ABC_tran" amino acids 22 to 150 (129 residues), 84.4 bits, see alignment E=4.1e-27 amino acids 300 to 435 (136 residues), 92.3 bits, see alignment E=1.5e-29 PF16326: ABC_tran_CTD" amino acids 533 to 601 (69 residues), 61.8 bits, see alignment E=2.1e-20

Best Hits

KEGG orthology group: K06022, molybdate-transporting ATPase [EC: 3.6.3.29] K10834, heme-transporting ATPase [EC: 3.6.3.41] (inferred from 100% identity to rru:Rru_A1013)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.29, 3.6.3.41

Use Curated BLAST to search for 3.6.3.29 or 3.6.3.41

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RVN1 at UniProt or InterPro

Protein Sequence (610 amino acids)

>Rru_A1013 ABC transporter component (NCBI) (Rhodospirillum rubrum S1H)
MAPPLLSLRDITLGFGGRPLFRGVSADVEPGARLCLVGRNGGGKSTLLKVMAGQVLADGG
ELFVQPGVAVSYLQQEPELGDHASLRDVVVEGLPGPHRGETHRADIVLEALGLDPERAPV
GLSGGEARRVALARALVGESEILLLDEPTNHLDLPAITWLEERLAAYRGALVLISHDRAF
LARLTKATLWLDRGVVRRLDQGFAAFEGWRDETLEQEAQASHKLDKLIAEETRWSHQGIS
ARRKRNQGRLARLYDLRHDREQQVAVQGLAKLKAEAGGVSGKLVIEAEAVSKAYGERVVL
QDFSLRLLRGDRLGIVGPNGAGKSTLLKILTGALAPDSGSVRLGTNLTTTYLDQSRSSLD
PTKSVRETLCDMGGDMVNVRGRPQHVIGYMRDFLFEDRQAVSPVGSLSGGERNRLLLAKA
LARESNLMILDEPTNDLDMETLDLLQDVLSDYEGTLLLVSHDRDFLDRVVGSTVLMDGAG
GAREYPGGYSDAIRQAGGAPWETARDKTKSGEGRGGAKPSAKSPAKPAARPTKLSYKQQR
QLELLPAQIDRLHSEIATLEAALTDSQFFVRDPEGYAGKADRMEAARAELAKAEDEWLEL
EMLREGLAGG