Protein Info for Rru_A0866 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 219 to 244 (26 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 315 to 339 (25 residues), see Phobius details amino acids 353 to 372 (20 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details PF13000: Acatn" amino acids 18 to 157 (140 residues), 74.4 bits, see alignment E=1.2e-24 PF07690: MFS_1" amino acids 19 to 361 (343 residues), 62 bits, see alignment E=7.1e-21 PF03092: BT1" amino acids 50 to 165 (116 residues), 23.7 bits, see alignment E=2.9e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0866)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RW28 at UniProt or InterPro

Protein Sequence (413 amino acids)

>Rru_A0866 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MDTTAKPFQGRKLLVMIGCLYLVQGLPVGLAFQAYPVLLRDGGASLELISLVPLASLPWV
FKVLWASLVENHWSARLGRRRSWILPMQTALALSLAGMAVLPFTAGNAPALLALVAVASL
VSATQDIATDGLASERLHGTGLAHVNTVQVAGFMIGMLAGGPLAMVGIGALGHLPTLLGL
AAMVLLCGLPVALWREPDPPQGGTPEPASLRAFFRRPGALPLLALGMCATMGGAVSFGVA
KLFLIDAGWSLDAVGTLSGTGNTLMIVAGCAIAGVMVVRFGALSTLVLGGGLVGISSLLW
AVLAMDPSLASLGAVWGLATASGLGIGVCTVASYTLLMGFAQRGRQPGTDYSAFQGLQTL
GEIVVMAATTALAARAGYAAALVIGLILALALLAMVVRLRNPGFTPTALTDGY