Protein Info for Rru_A0865 in Rhodospirillum rubrum S1H

Annotation: TonB-dependent receptor (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 720 signal peptide" amino acids 1 to 53 (53 residues), see Phobius details PF07715: Plug" amino acids 88 to 189 (102 residues), 68.7 bits, see alignment E=6.1e-23 PF00593: TonB_dep_Rec" amino acids 217 to 684 (468 residues), 166.6 bits, see alignment E=1.8e-52

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to rru:Rru_A0865)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RW29 at UniProt or InterPro

Protein Sequence (720 amino acids)

>Rru_A0865 TonB-dependent receptor (NCBI) (Rhodospirillum rubrum S1H)
MPLSRIIEQRMRGRFLSGGVWNVVSEMNRRRALPAVLSLAVAQMVGATVAVADDRKETAQ
EVQVAGSGEVYQLQPVTVTAEKMTSTDQDTPVSMTVVTGEDLERSAAKDTIDIVRQVPNM
YMTKAGQHASVAFLSMRGVTPFMEAEQPVGFFVDGVHYRNVDMELLDIDRVEVLRGPQST
LYGRNTEAGAVTIITRDPEPHQEGQVSVGIGNYNRKTISGITGGPLGSEDWSYRAAVQFL
DSDGYFTREPDGADDVDDATNVNARFKVRWQPQQAWDVIATYDGARYREGSTNIAPLSAL
REDSHKVSSNYIGSNDSDVHGGNVRAVYEAPAVTVTSISAYGYENKDTTYDVDGSALDLM
RLRTGVDYSRFTQELRLSSPEGASGPRWVGGVYYFDQTDHNDIDMTMTGMGMGVQSVRTT
TDTRNMAAFGQVTWPLIDSLSLITGLRYDHERKDVESQQTWAAMGRDTGVDQDMTFHAWL
PKVGLEYKPFPTLLTYATYSGGYKAGGFNNLADPGNEKYDAEYTRNYEIGVKHTALDNTL
STKLSLFWIDWTDQQVEELILSQSNISNAGQSVSRGVELELAWKATKALLLKAGAGWNDA
HFTKYEDNGTDFSGKRPPNAPAYTYSLGADYSFENGLYAHADWLGTGEVYFNSANTQKER
PYGLLNLKTGYQGESYEVALWVKNALDADYATRAFDLGGGTYGGIAGDPRTFGMTVTARW