Protein Info for Rru_A0690 in Rhodospirillum rubrum S1H

Annotation: PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1186 PF08495: FIST" amino acids 51 to 263 (213 residues), 86.7 bits, see alignment E=7.7e-28 PF10442: FIST_C" amino acids 279 to 401 (123 residues), 42.6 bits, see alignment E=2.7e-14 PF12860: PAS_7" amino acids 520 to 636 (117 residues), 71.6 bits, see alignment E=2.5e-23 TIGR00229: PAS domain S-box protein" amino acids 643 to 759 (117 residues), 32.8 bits, see alignment E=3.2e-12 PF00989: PAS" amino acids 644 to 751 (108 residues), 32.3 bits, see alignment E=3.6e-11 PF08448: PAS_4" amino acids 650 to 755 (106 residues), 33.8 bits, see alignment E=1.4e-11 PF13426: PAS_9" amino acids 654 to 752 (99 residues), 32.1 bits, see alignment E=4.6e-11 PF02518: HATPase_c" amino acids 1073 to 1182 (110 residues), 76.8 bits, see alignment E=7e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0690)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RWK1 at UniProt or InterPro

Protein Sequence (1186 amino acids)

>Rru_A0690 PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) (Rhodospirillum rubrum S1H)
MARATQDKTLMASPAPAGLPDGRMVRVREAGPDLAGVDEASFGFSGRPAALALAFVSPHL
DFAEVLEGLRRLAGPTPLIGVSSFGGLCASCPGGGLYRSAGPEAPGIILQVFSAEVIGTV
SIQSVFLHNADIRGEQPSLERDTRVARIGADLAEIALPFALDARDSLALTFVDGLSACEN
YLMEAIYESARFPCLFVGGSAAGTLEFRHTYLFDGQRVLEDHAVLVFIKLAPGKRYGILK
SQNFVKSGVAFSVVEADADRRTVTSVLDEATGAVRPFIEVLAETLGTLPEGVGDRLIGHT
FGIEVSKELFVRSVSRIDLAAGTVSFFCDVNRGDRLELLDATDFVEQTRRDVVDFLRDKP
PPLGVLLNDCILRRLNNEPALAGLNDLWLTETAGFSTFGELLGININQTLTAVAFFDDPD
GAFHDSFVDGFPLHYASYCSYFTLTRLHRLESVARLRADMTTRLIHHLGASPDLAALIEG
MVDSSPDVGAMLSGIRAAIARDLAAEERVRQAERQLKEAIETINDGFAFYDADDRLVICN
AQYRTTFAGAEDAIEPGNTFGDIVRDIAARGVFCQEGADLERFVAERLAEHRAPTGRGQL
HRVSDGHWIVSKEFRMPGGGVVATRTDVSELKRREEEVEALKRRYELILRSAGDGIVGID
RDETIIFANQAAGAMLGRPAETLIGCPYRPVLSGGVEAPFLPAFPLLGETGLTGEGVFLR
DGGTDFIAEFMLAPIRETATFEGAVLVFRDISLRKHYEAGIVDQQRRLEEEVAERTFKLS
AEISMRSRVENVLRDSQGRMRAIAASLFEGVLLIDAHGIIVFANKSAYRWLETVDLVDHE
LDEVLKLRGTGRLIDFAEGPFRRVIDSGETLIDDDAAFVVGSGHVVSVAYAASPLEEGGK
RRIAVLSFRSIDALKEAQREALQASRLASVGQLAAGIAHEINTPIQYIGDNLRFIEGALG
ELGGVLADLRALAARGGLEAEADGCFAAKDIAYLMEELPLAATQSLQGVDHVAHIVRSMK
EFSHPGTTAKVATDINRAIDSTLTVSRNEWKQLAQVETDLDDDLPLILCFAAEINQVLLN
LIVNAAHAIETVRAEGQLGTIRIATRGEAECIEIRITDSGPGVPPAIRDKIFDPFFTTKS
VGKGTGQGLSICRDVVVTKHGGKMYLDTSVAPGACFVVRLPIGNAE