Protein Info for Rru_A0584 in Rhodospirillum rubrum S1H

Annotation: inner-membrane translocator (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 62 to 85 (24 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 223 to 279 (57 residues), see Phobius details amino acids 311 to 327 (17 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details amino acids 414 to 436 (23 residues), see Phobius details amino acids 457 to 478 (22 residues), see Phobius details amino acids 501 to 526 (26 residues), see Phobius details amino acids 545 to 567 (23 residues), see Phobius details amino acids 579 to 602 (24 residues), see Phobius details PF02653: BPD_transp_2" amino acids 11 to 279 (269 residues), 113.5 bits, see alignment E=5.2e-37 amino acids 334 to 590 (257 residues), 117.3 bits, see alignment E=3.5e-38

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to rru:Rru_A0584)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RWV7 at UniProt or InterPro

Protein Sequence (613 amino acids)

>Rru_A0584 inner-membrane translocator (NCBI) (Rhodospirillum rubrum S1H)
MSVDFLIVQFLGGLASASSLFLVAAGLSIIFGVTRVVNFAHGTLFMIGAYLAYTLAETLG
LGFWPALLLAPLAVGGLGALIEIGLLRRIYRAPELFQLVATFALVLIASDVVPMIWGPED
LLGPRAPGLGGAVSVMGRAVPEYDLFLIALGPLVLGALWLVFTRTRWGLLVRAATEDREM
VAALGTDQRWLFTGVFALGALLAGLGGALALPREAIGHGMDAGVIVQAFVVVVVGGMGSV
PGAYLAAVLLGLVNAFGVAFFPQGTLVTMGLVMGAVLIVRPRGLLGRIESEGGVSAVGPG
PRLRPASGKGRLLWGLGVVLVLAAPRFLDAYGLSLLCEALILALSASALQLLMGTGGMVS
FGHGAFFGLGAYGTAVAVVQGGLSLPIALACAPLAGGLGGLLVGWLISRLSGVYLAMLTL
AFAEIIHALAIQAVGVTGGDNGLIGVWPPPWAGDPAVFAWLVMAICLPALFGLRALALGE
FGRRLRALRDARSRAEASGIAAARLHALTFAIVGAGAGLAGGLFAFLKGSVFPAITAIPT
SVDALVMVLLGGLHALAGPLVGAFLYLGLESVVAARTDLWQLVVGLVVLGLVLVFPQGVA
GAAGRLARRGRPQ