Protein Info for Rru_A0484 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 76 to 100 (25 residues), see Phobius details amino acids 120 to 145 (26 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 201 to 224 (24 residues), see Phobius details amino acids 231 to 255 (25 residues), see Phobius details amino acids 275 to 300 (26 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 13 to 292 (280 residues), 44.5 bits, see alignment E=7.3e-16

Best Hits

KEGG orthology group: K07027, (no description) (inferred from 100% identity to rru:Rru_A0484)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RX56 at UniProt or InterPro

Protein Sequence (331 amino acids)

>Rru_A0484 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MKTKEFAWPAIGLVAVAFSLWLLYKELRGISLDDVIDSLNAIPYSHWGLAAGSAVIAYMA
LAGYDRIALLHLGKRLPWSFIALCSFTTYALSHNIGASVFSGAVVRYRAYTSRGLSGGEV
GLLVAFCSFTFLLGALLLGGAVLLFEPELMARYFPDLPIGGPIAMGAIMLLVVALYIFGS
VMGFKPRRIGRFPLAYPRFSVVLQQLAMGPIELIGAAAIIYFALPEVGNPGFMVVLGIFL
ASFSVALLSHAPGGLGVLEVLFLTGLPDINQADVLAALVVFRMFYLLIPFALSLVVILLF
ERAQFLNWAKRKAEASVLAARSSRQRPPPGP