Protein Info for Rru_A0473 in Rhodospirillum rubrum S1H

Annotation: Peptidoglycan glycosyltransferase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 681 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR03423: penicillin-binding protein 2" amino acids 13 to 621 (609 residues), 705.1 bits, see alignment E=3.8e-216 PF03717: PBP_dimer" amino acids 59 to 239 (181 residues), 148.4 bits, see alignment E=3.3e-47 PF00905: Transpeptidase" amino acids 272 to 617 (346 residues), 217.3 bits, see alignment E=2.8e-68

Best Hits

KEGG orthology group: K05515, penicillin-binding protein 2 (inferred from 100% identity to rru:Rru_A0473)

Predicted SEED Role

"Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Flagellum in Campylobacter or Peptidoglycan Biosynthesis (EC 2.4.1.129)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.129

Use Curated BLAST to search for 2.4.1.129

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RX67 at UniProt or InterPro

Protein Sequence (681 amino acids)

>Rru_A0473 Peptidoglycan glycosyltransferase (NCBI) (Rhodospirillum rubrum S1H)
MRRDVDRAKLFTRRAVLLGGAQAGLVGALAARMYYLQVIESDRYLTLAEENRFNLRLLPP
PRGHIVDRFGDQLAVNRQNYRVSIIAEDILRQVRTAEERQLAIDATLDALGKIVPLSDYD
RTRVLRDMKRRRSFVPVTIRENLTWEEMAAIEVHKLDLPGITIDEGLSRHYPYGDLAAHL
LGYVSSVSEEEVTGDPLLELPGFRIGKQGVEKVYDLALRGHGGTSRVEVNALGRVMDEQT
TEDASAGAELPLTIDMRLQSFASRRLASESASAVIIDIHTGDILSMVSMPAYDPNAFTRG
LSSAEWQDLVRNPRSPLTNKAIAGQYSPGSTFKMVVALAALEGGVIKADQTVFCPGHMEL
GGHRFHCWKKGGHGSLNLVGALAESCDVYFYELARRCGIDRIAEMARRFGIGEILDVGLP
GERSGLMPTRAWKAATLGEGWHQGETLLAGIGQGYVLTTPLQLAVMTARIANGGLKIMPR
LSRFAAKPDSPGFLAASAQEVPAVPPLGVAKAHLDAVRRGMWAVVNGDRGTARRAAGIPV
AGWEMSGKTGTTQVRRISMRERETGIRREDQLPWELRNHALFVCYAPEDAPRYAVALCVE
HGGGGSSAAGPIARDIMLETLRLDPARKRPGEEIKMADLPPAARALVAQAHAAATPMGPP
LPPDGLPEDSEETPGSEEIDG