Protein Info for Rru_A0448 in Rhodospirillum rubrum S1H

Annotation: Protein of unknown function DUF52 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 TIGR04336: AmmeMemoRadiSam system protein B" amino acids 17 to 274 (258 residues), 239.3 bits, see alignment E=2.4e-75 PF01875: Memo" amino acids 19 to 271 (253 residues), 149.4 bits, see alignment E=6.1e-48

Best Hits

KEGG orthology group: K06990, (no description) (inferred from 100% identity to rru:Rru_A0448)

Predicted SEED Role

"COG1355, Predicted dioxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RX92 at UniProt or InterPro

Protein Sequence (282 amino acids)

>Rru_A0448 Protein of unknown function DUF52 (NCBI) (Rhodospirillum rubrum S1H)
MGQSPSAPTRGPLLADRPMAVAGRFYPGDPAQLAQEVDSLLAGVKASPAPLRPKAVVAPH
AGLAYSGPTAAHAFAPLARHRDAIHRVVVLGPSHRLAFRGLALSGTRAYDSPLGPVPVDH
SWQDRLSDLAFVGRLEQAHGPEHALEVELPFLQRILGPFSIVPIVCGEAAAEEVAQALER
VWGGPETLIVVSSDLSHYLEYEDARRQDGRTATAIARLDGAPIGPREACGHVPLGGLLCL
ARAAGMTTRCLDLRNSGDTAGPRDRVVGYGAWAFYDPTNLLG