Protein Info for Rru_A0381 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily transporter MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 54 to 72 (19 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 111 to 128 (18 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 211 to 236 (26 residues), see Phobius details amino acids 243 to 266 (24 residues), see Phobius details amino acids 278 to 296 (19 residues), see Phobius details amino acids 302 to 319 (18 residues), see Phobius details amino acids 342 to 366 (25 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 355 (336 residues), 181.7 bits, see alignment E=2.9e-57 PF00083: Sugar_tr" amino acids 56 to 188 (133 residues), 37.4 bits, see alignment E=2.2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0381)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RXF9 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Rru_A0381 Major facilitator superfamily transporter MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MKPPGSSVPVAANRGVTTTLALSMLLAALGTSIANIALPRLAEAFSAPFHHVQGVVIAYL
GTLTVSVLIVGRLGDLHGLRRMHLVGLGLFAVASLLCALAPTLWLLIGARALQGLGAAFL
MSLSMALMRETTSPERMGRAMGLLGTMSALGTALGPSLGGALLSASGWRGIFLVQCPLAV
LALILAFVSLPSPAGKESGPPTRVRAMVKVAMLPALLINLLVAAVMMTTLVVGPFYLGRG
LGLAETAVGLVMAVGPALAIVSGLPSGRLVDAWGARRVVGIGLAMLAAGAFLLSVLPNSL
GVGGYVLAILVLTPGYQLFQAANNTATLADSPKEGRGVVSGLLGLSRNIGLILGASVMGA
LFAFAVGSEDVGRASALAIAKGMQLTFLVAAGLMVGGLWIAWLTARRHGEAQGR