Protein Info for Rru_A0126 in Rhodospirillum rubrum S1H

Annotation: ABC transporter component (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 PF00005: ABC_tran" amino acids 30 to 171 (142 residues), 103.3 bits, see alignment E=1.6e-33

Best Hits

KEGG orthology group: K01990, ABC-2 type transport system ATP-binding protein (inferred from 100% identity to rru:Rru_A0126)

Predicted SEED Role

"InterPro IPR001687:IPR003439:IPR003593 COGs COG1131"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RY64 at UniProt or InterPro

Protein Sequence (271 amino acids)

>Rru_A0126 ABC transporter component (NCBI) (Rhodospirillum rubrum S1H)
MTPREPRAIDVENLTKIFDDRKRGRVTAVDALSFEVPQGATVGLLGGNGAGKTTTLSMLL
GLLLPTTGRVRVLGVDMVRDRHKALARMNFSSPYVDLPHRLTVRENLTVYAHLYGLSRPA
ARIAELARDLDVAGLLERPAGKLSAGQKTRVALAKALLNDPLVLILDEPTASLDPDTGDW
VRGYLEEWRRRRGATVFLASHNMAEVERLCEAVLIMRGGRVHDRGTPNDLVSRYGRVSLE
EVFLDIARAAPGPGGSEASGGEAAQRSPSDR