Protein Info for Rru_A0070 in Rhodospirillum rubrum S1H

Annotation: Protein of unknown function DUF6, transmembrane (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 64 to 64 (1 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 242 to 259 (18 residues), see Phobius details amino acids 271 to 290 (20 residues), see Phobius details amino acids 296 to 314 (19 residues), see Phobius details PF00892: EamA" amino acids 44 to 174 (131 residues), 65 bits, see alignment E=4.5e-22 amino acids 185 to 308 (124 residues), 36.8 bits, see alignment E=2.3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0070)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RYC0 at UniProt or InterPro

Protein Sequence (331 amino acids)

>Rru_A0070 Protein of unknown function DUF6, transmembrane (NCBI) (Rhodospirillum rubrum S1H)
MNCKPPNGVDKSAQPLLDNPVLLMTSLPTGLPAVGARRDNPLAAIGFIVLAMALFAIMDT
LAKLLSAGQPILLIVLFRSLGALIVLTPVFLRQPASHRRLIQPRLLALRVVLGTTAVTLF
FMAIAKMSLADVAAINFSSPLMVTLLSIVLLKERVGPRRWLALLVGFAGVLVILRPGGGV
LSQYALFAVGGTLCYAVLMIILRLQGQIMTSATSSFWFTLFSPLLVLPAMPAVWVTPDPG
DLAMLLILGMVGGLAMLSMTQAMRLAPASTVAPFDYSYLIWAVAAGWFLFGDLPSPSSLM
GLPLIIGSGLYILHRETIVNRRPKVLEAEAP