Protein Info for Rru_B0007 in Rhodospirillum rubrum S1H

Annotation: Glycosyl transferase, group 1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1236 PF13578: Methyltransf_24" amino acids 66 to 182 (117 residues), 84.7 bits, see alignment E=1.6e-27 PF00534: Glycos_transf_1" amino acids 681 to 840 (160 residues), 64.5 bits, see alignment E=1.8e-21 PF13692: Glyco_trans_1_4" amino acids 685 to 834 (150 residues), 56.4 bits, see alignment E=8.3e-19 PF05045: RgpF" amino acids 986 to 1211 (226 residues), 171.4 bits, see alignment E=6.3e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_B0007)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RMP2 at UniProt or InterPro

Protein Sequence (1236 amino acids)

>Rru_B0007 Glycosyl transferase, group 1 (NCBI) (Rhodospirillum rubrum S1H)
MFHRASAFMTDITPIAPAISSASDPVWRQAGLETLVPRRLVQPDSWAGHIPFAFWVIAQH
RPRQCVELGVHTGNSYCAFAQAVEHLGLETKCVGVDHWFGDPQAGYYGEDVYADLKAHHD
PLYGHFSRLLRMSFEDGRAYVADGSVDLLHIDGLHTYEAVREDFETWHSKMSERGIVLFH
DTDVRTDDFGVWRFWAEIAERFPSFEFDHSNGLGVAYVGTRPIEAPGLAELFAAGSDPQA
RDLPRRYFARMGEGWINRVRLDLATEQWNATTNALNHLQARIDEIERDRLGLRREREILL
QRLIKVDQWDALALQCRDGLDIDLDALAEAIGGLYNADQPQAIEARATLHRVLRHLIEEG
TCGSVPGDVSRRLMRLSKKAGARVVAPFKAPAKKQERPLDFLRESGFFDESFYALSSEAL
AEGRDPLEHYLTVGEAMGVAPSRSFEPEYYARRHPDVLASGMGLLRHYARFGAQEGRQGL
SPARRLALPDLSAATREKVVLLLQDASGSDVSLYGLFLARALQDLHEVIVFLKEDGPLRS
AFKESGITLIDMPSETELFRCDINAVAKRLVEALQPAYVIANSAETRSFVPPIVQAGFGV
VALVQDFAFSVYPKNEIYEIFAWAHHLVFPARAIMESFVEDHPFLGQRRYEILPQGIPAL
PELDARLPSKQGSALRPAGHEDDFVVVGIGPLRFEKGADLFVSVATAALQERPDANLRFV
WIDQTPSFDEQAEFSKYLQEQILRAGLSEHFSVLGALDGTDVYEQADLLALTSRLDPMPR
VYVEALTQGKPVACFEHASGLAEVLAGNEETRSLVVPYLDTTAMAKAILAFYDDPVRQES
LVPTLRDKARETFCMASYLSRVEALGQQASREAKGISHDYEKISASGLFKASFLTPSVSE
ETTEETLKGYLVRNRIGASKSQSDNWIDLRRPVIGFNPLVYAENISGLNGHKDPLADWIE
RGSPKGNWTHPVIDLETSLPSPIEGGKVLLHGHFYYVDLIDDFLKKIIINDFSCDLIITT
TDEDRAVFLRKKLEEYKNGSVEVRVVPNIGRDVGAFFTGLSDLKNSDYDVVGHIHGKKSI
HLSDGTGNKWRNFLWEHLIGGEKKAAAIAVSALIRNPDIGLVFAEEPFLFGWDKNKELAN
DLAKKMGIEKSLPRFFDWPIGTMFWAKRKALEPIFDLNLRWEDYPPEPIPVYGTMLHALE
RLLPFAVEKAGFSFATTYLPSNSDNIFRTPIDKVGS