Protein Info for Xcc-8004.887.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 309 to 333 (25 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 20 to 367 (348 residues), 392.2 bits, see alignment E=1.1e-121 PF01098: FTSW_RODA_SPOVE" amino acids 21 to 367 (347 residues), 328.7 bits, see alignment E=2.2e-102

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 100% identity to xcc:XCC3466)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5H6 at UniProt or InterPro

Protein Sequence (372 amino acids)

>Xcc-8004.887.1 Rod shape-determining protein RodA (Xanthomonas campestris pv. campestris strain 8004)
VSDILRWLVDLAARFARSLDWVLCLALAALMVIGLSVLKSAGGTANGDHLVMAQGVRFAI
GAAAMWGISRMSVLRLRAWTPWVYGLSMLPLLAVFALGTGKYGRQWLDLKLFYLQPAELL
KISLPMMAAWYLHRMPLPPRISTVLVTCVIIGVPTALIMLQPDFGTGVLIAASGVFVLLL
AGLPWWWVAVGVGGVSAAAPVAWFWLLRPYQKDRIMMFLNPENDALGAGWNIIQSKIAIG
SGGLNGKGWGLGSQSHLNFIPEQTTDFAFSVLSEEFGWIGVATVLTLYLVVIGRCLWIAS
QARDTYSRLIAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLMSYGGTSAVSLLAGLGLV
MAVKSHRPVHGY