Protein Info for Xcc-8004.833.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Putative salt-induced outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF04338: DUF481" amino acids 47 to 265 (219 residues), 200.5 bits, see alignment E=1.7e-63

Best Hits

KEGG orthology group: K07283, putative salt-induced outer membrane protein (inferred from 100% identity to xca:xccb100_0686)

Predicted SEED Role

"Putative salt-induced outer membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5C5 at UniProt or InterPro

Protein Sequence (266 amino acids)

>Xcc-8004.833.1 Putative salt-induced outer membrane protein (Xanthomonas campestris pv. campestris strain 8004)
MSRRAPLSALLPLLLITPTVWAQAIAPAPADPAAALMPSPWSGSSGELGYASAHGNSTTD
SLNGRIRLRYTDGDWIHSLDATALRSSSEYTNTNDDGSVTRERQTTAERYTGSAGSALQL
GEHRQLTATGRYEHDDFATYDRLATFGIGYGTRLIDADRFYLDAQIGPGIRRAHNSDDDR
NETGLIGRGLFDLKYTVTDNTDLINTLLVESGEYNTYAQNDFGVQVSMNSHFALKAAWQM
RHNSDVSEGDKKTDTLTTVNLVYTFK