Protein Info for Xcc-8004.678.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00514: acetyl-CoA carboxylase, biotin carboxylase subunit
  • amino acids 1 to 445 (445 residues), 768.3 bits, E=1.3e-235
• PF00289: Biotin_carb_N
  • amino acids 1 to 110 (110 residues), 152.7 bits, E=1.5e-48
• PF02655: ATP-grasp_3
  • amino acids 114 to 294 (181 residues), 28.5 bits, E=4.6e-10
• PF02786: CPSase_L_D2
  • amino acids 115 to 323 (209 residues), 272.6 bits, E=6.5e-85
• PF02222: ATP-grasp
  • amino acids 146 to 292 (147 residues), 28.9 bits, E=2.5e-10
• PF07478: Dala_Dala_lig_C
  • amino acids 146 to 291 (146 residues), 36.7 bits, E=9.6e-13
• PF02785: Biotin_carb_C
  • amino acids 336 to 441 (106 residues), 139.3 bits, E=1.5e-44

Best Hits

Swiss-Prot: 76% identical to ACCC_ECOLI: Biotin carboxylase (accC) from Escherichia coli (strain K12)

KEGG orthology group: K01961, acetyl-CoA carboxylase, biotin carboxylase subunit [EC: 6.3.4.14 6.4.1.2] (inferred from 100% identity to xca:xccb100_0545)

MetaCyc: 76% identical to biotin carboxylase (Escherichia coli K-12 substr. MG1655)
Biotin carboxylase. [EC: 6.3.4.14]

Predicted SEED Role

"Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)" in subsystem Fatty Acid Biosynthesis FASII (EC 6.3.4.14)

MetaCyc Pathways

• biotin-carboxyl carrier protein assembly (4/4 steps found)
• fatty acid biosynthesis initiation (type I) (1/3 steps found)
• jadomycin biosynthesis (3/9 steps found)
• 3-hydroxypropanoate cycle (5/13 steps found)
• 3-hydroxypropanoate/4-hydroxybutanate cycle (8/18 steps found)
• glyoxylate assimilation (4/13 steps found)
• superpathway of the 3-hydroxypropanoate cycle (5/18 steps found)
• superpathway of mycolate biosynthesis (22/239 steps found)

KEGG Metabolic Maps

• Fatty acid biosynthesis
• Propanoate metabolism
• Pyruvate metabolism
• Tetracycline biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 6.3.4.14, 6.4.1.2

Use Curated BLAST to search for 6.3.4.14 or 6.4.1.2

Sequence Analysis Tools

See A0A0H2X393 at UniProt or InterPro

Protein Sequence (455 amino acids)

>Xcc-8004.678.1 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) (Xanthomonas campestris pv. campestris strain 8004)
MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGPAASSDSY
LNIPALIAAAEVTDAQAIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAI
RAMKAAGVPCVPGSGGPLGDDIVANTKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKA
AIETTKSEAKAAFSNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVV
EEAPAPGISEELRAEIGKVCVDACIRIGYRGAGTFEFLFEGGRFYFIEMNTRIQVEHPVT
ERITGIDLVCEQLRIAAGHKLSIKQSDIVLRGHAIECRINAEDPETFMPNPGLITAFHPP
GGPGVRVDTHIYAGYKVPPNYDSMIGKLIVHGPDRETAIARMRVALSEMVVDGIKTNIPL
QQRIMRDKGFQAGGQNIHYLEKRLAERKNKSIALV