Protein Info for Xcc-8004.562.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: ATP-dependent RNA helicase RhlE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00270: DEAD" amino acids 29 to 198 (170 residues), 143.1 bits, see alignment E=7.1e-46 PF00271: Helicase_C" amino acids 237 to 344 (108 residues), 93.3 bits, see alignment E=1.1e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC0425)

Predicted SEED Role

"ATP-dependent RNA helicase RhlE" in subsystem ATP-dependent RNA helicases, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4R4 at UniProt or InterPro

Protein Sequence (430 amino acids)

>Xcc-8004.562.1 ATP-dependent RNA helicase RhlE (Xanthomonas campestris pv. campestris strain 8004)
MSLKADLLSLQLQPVFESALARAGVRALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYA
LPLLQQRLQAPEQAPRVLGGLILVPTRELVAQVAHTLLSLAAALPRRLKIVAATGGEAIN
PQLMALRGGADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILAL
LPAQRQSVLVSATFPAAIASLAKRRLRDPLRITLGGTPEQAPAIAQRAIAVDAGQRTQLL
RHLLLEHGWPQLLVFVTSRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADV
QVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ
WRLIEKRQGLRVPTSVIEGFEPTPVQAPAPDHASGAAARAADDNGGIKGKRPSKKDKLRA
AAQAQAGKPG