Protein Info for Xcc-8004.557.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: cation efflux system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1032 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 467 to 490 (24 residues), see Phobius details amino acids 528 to 548 (21 residues), see Phobius details amino acids 860 to 879 (20 residues), see Phobius details amino acids 886 to 907 (22 residues), see Phobius details amino acids 913 to 934 (22 residues), see Phobius details amino acids 963 to 982 (20 residues), see Phobius details amino acids 988 to 1012 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1010 (1002 residues), 481.6 bits, see alignment E=2.3e-148

Best Hits

KEGG orthology group: None (inferred from 86% identity to bug:BC1001_4646)

Predicted SEED Role

"cation efflux system protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3D6 at UniProt or InterPro

Protein Sequence (1032 amino acids)

>Xcc-8004.557.1 cation efflux system protein (Xanthomonas campestris pv. campestris strain 8004)
VSEGRFNLSALAVRERSITLFLIVLISLAGLVAFLKLGRAEDPAFTVKVMTIITAWPGAT
PQEMQEQVAEKLEKRMQELRWYDRTETYTRPGLAFTTLTLLDSTPPGEVQEQFYQARKKV
GDEAGNLPAGVIGPMVNDEYADVTFALFALKAKGEPQRLLARDAETMRQRLLHVPGVKKV
NIIGEQPERIFVEFSHDRLATLGVSPQDVFAALNAQNALTAAGSVETRGPDVFIRLDGAL
DNLQKIRDTPLVVQGRSLKLSDIATVKRGYEDPSTFMIRSGGEPALLLGIIMRDGWNGLD
LGKSLDAEVGAINAELPLGMQLSKVTDQAVNIDASVGEFMTKFFVALLVVMLVCFVSMGW
RVGIVVAAAVPLTLAAVFVVMLATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEE
GYGRVAASAYAWSHTAAPMLSGTLVTAVGFMPNGFAASTAGEYTSNMFWIVGIALIVSWA
VAVVFTPYLGVKMLPDMKKIEGGHAAIYNTPRYNRFRQALGRVIARKWLVAGSVVGLFVL
AVVGMGIVKKQFFPISDRPEVLVEVQLPYGTSINQTSTAAAKVEAWLSKQKEAKIVTAYI
GQGAPRFFLAMGPELPDPSFAKIVVRTDDQHERDALKLRLREAIAQGLAPEARVRATQLT
FGPYSKFPVAYRVSGPDPTVLRGIAAQVMQVMQDSPMLRTVNTDWGVRTPTLHFSLDQDR
LQAVGLTSAAVAQQLQFLLSGVPITLVREDIRSVQVVARSAGDTRLDPARIADFTLAGGN
GQRVPLSQVGKVDVRMEEPVMRRRDRVPTITVGGDVDDTLQPPDVSAAITRQLQPIIDKL
PSGYQIKEAGSIEESGKATAAMLPLFPIMLAATLLIIILQVRSISAMVMVFLTSPLGLIG
VVPTLILFQQPFGINALVGLIALSGILMRNTLILIGQIHHNEAEGLDPFHALVGATVQRA
RPVILTALAAILAFIPLTHSVFWGTLAYTLIGGTLAGTVLTLVFLPAMYSIWFKIRPDPG
KGNNAPDIARPA