Protein Info for Xcc-8004.541.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02446: Glyco_hydro_77" amino acids 153 to 297 (145 residues), 55.2 bits, see alignment E=3e-19 amino acids 305 to 614 (310 residues), 241.8 bits, see alignment E=7.6e-76

Best Hits

KEGG orthology group: K00705, 4-alpha-glucanotransferase [EC: 2.4.1.25] (inferred from 100% identity to xcc:XCC0411)

Predicted SEED Role

"4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)" in subsystem Glycogen metabolism or Maltose and Maltodextrin Utilization (EC 2.4.1.25)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.25

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X312 at UniProt or InterPro

Protein Sequence (643 amino acids)

>Xcc-8004.541.1 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) (Xanthomonas campestris pv. campestris strain 8004)
MSTQELHALAAAAGVMVDWVDASDQPRQVAPESIHAVLTALELPAANAAQRADSLQRIRA
TAAEPAPLVTVKVGEPLPLRVAPNAQGRWQAEDGSSEAARADAQGRLLAPARFGYWTLEL
GTTAQQVAVAPQRCFSVADACGQPAPRAWGMALQVYSARSADDGGIGDAAGAMEWVRQAA
GANADALALSPVHASRPITGGYSPYSPSDRRFLDPLHAAPVRVLGDAVHTAIAAVPGLRE
RLDGLHGTALIDWPASAAAKWELLRQLSTQVTPDHPELAAFRAQGGAALEAFAHFAARDF
GDGDAHLHVFTQWLAARSWADVQREAHERGMRIGLIADLAVGFDPNGAEAAAAADTVLRG
LVLGAPPDAFNADGQHWGIGAYSPTALRRSGFAPYIALLRAVLRDRGGIRIDHILGLLRL
WVVPDGASSGDGAYLAYPLQDLLNLLALESWRHRAIVIGEDLGVVPPGIREELSRRGVMG
IDVLMFTRDQEGAFVPPALWRADAVATTTTHDLPTLTGWRAGRDIDWRRKLELIQPAQAQ
ADHQTRTRDASRLDAAVADAGLGSDAPLLDALRFTASSVSPLALLPVEDALALDEQPNLP
GTVEVHPNWRRRLPDPLPQAQLTAALQGFAEARRVSAVSEPHP