Protein Info for Xcc-8004.5408.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Polysaccharide deacetylase, caspase activity

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 919 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details PF01522: Polysacc_deac_1" amino acids 272 to 403 (132 residues), 87 bits, see alignment E=5.6e-28 PF00656: Peptidase_C14" amino acids 494 to 690 (197 residues), 79.8 bits, see alignment E=1.5e-25 PF13432: TPR_16" amino acids 811 to 871 (61 residues), 31.9 bits, see alignment 8.3e-11 amino acids 863 to 906 (44 residues), 17.1 bits, see alignment 3.4e-06 PF13414: TPR_11" amino acids 812 to 852 (41 residues), 29.6 bits, see alignment (E = 2.6e-10) amino acids 848 to 887 (40 residues), 28.6 bits, see alignment (E = 5.2e-10) PF13424: TPR_12" amino acids 838 to 903 (66 residues), 38.3 bits, see alignment 6.9e-13 PF13374: TPR_10" amino acids 839 to 868 (30 residues), 24.6 bits, see alignment (E = 1.1e-08) PF07719: TPR_2" amino acids 839 to 871 (33 residues), 25.5 bits, see alignment (E = 5.3e-09) amino acids 874 to 905 (32 residues), 23.4 bits, see alignment (E = 2.6e-08) PF14559: TPR_19" amino acids 851 to 916 (66 residues), 28.8 bits, see alignment 6.7e-10 PF13181: TPR_8" amino acids 875 to 905 (31 residues), 20 bits, see alignment (E = 3.2e-07)

Best Hits

KEGG orthology group: None (inferred from 99% identity to xca:xccb100_4465)

Predicted SEED Role

"Polysaccharide deacetylase, caspase activity"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XCZ7 at UniProt or InterPro

Protein Sequence (919 amino acids)

>Xcc-8004.5408.1 Polysaccharide deacetylase, caspase activity (Xanthomonas campestris pv. campestris strain 8004)
MCPRSAPPHVLTIAKDAFVMSLPLHRLLLCASCLGLLLLAGCGKPQDGRDGQEAAKPAAS
ATPAAQNDPAAEDARVLIAQLREQLDRHRRIIVLLADEAAQSPRDRATSSSVGQQLFHEN
LEQRERIAARFETVLASKASTRFATLATVLDDVESAPDLYDADRLAFREVLRDLHARIGR
DSALPAVKLHQRIGEDLEALDEIERTYNTELTQIFSRFDRSRAITPKREKWDDYVAHLRT
LYTREKILRDHGVVEPYPFSARDSESEIFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKR
YDVPGVFFEVGRNLGNLDAQGKPTLAPLAKISHSLMEEGYAVGNHSLTHAQLSKTTGAAL
RSQVLDTDTLLRAVDDKRAPLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSMDWADPVPE
SIVQRVLDQVNKEQRGIVLFHDIHDRAVKALPQILDRLIADGYQFAGWNGRDFSVARAPS
ATAAATVTTGYAKSWAIVIGIDDYARWPKLEYAANDAQAIANTLTGPLGFPSSQVIVLKN
AEATRNNILAAFHDRLGDGRAQTNDRVFVFFAGHGATRRLASGRDLGYIIPVDSDPEHLA
NDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPSSSAYLRENARRIARQMLTAG
GADQQVADSGPNGHSVFTWVVLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAF
GSLPGSQGGEFVFQVPSGEEFLTADTAQLSAAAIALNGRVDAVRPAAVSAGVPANAAPVT
VKTLQGGEATLVLPTAVKSSDRQRAQLANERGLQLYKEKRYADAAEQFAEALKLRPDFAL
AANNLGFVYYRQERYAEAARWLENTLKIDPSRAVAYLNLGDAYAKAGDREKARKAYTTYL
ALQPQGAGAEQARAQLQTL