Protein Info for Xcc-8004.537.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 PF08323: Glyco_transf_5" amino acids 55 to 285 (231 residues), 212.4 bits, see alignment E=1.3e-66 TIGR02095: glycogen/starch synthase, ADP-glucose type" amino acids 55 to 516 (462 residues), 471.9 bits, see alignment E=1.1e-145 PF00534: Glycos_transf_1" amino acids 339 to 479 (141 residues), 60.3 bits, see alignment E=2.6e-20 PF13692: Glyco_trans_1_4" amino acids 343 to 478 (136 residues), 48.8 bits, see alignment E=1.4e-16

Best Hits

Swiss-Prot: 96% identical to GLGA_XANC5: Glycogen synthase (glgA) from Xanthomonas campestris pv. vesicatoria (strain 85-10)

KEGG orthology group: K00703, starch synthase [EC: 2.4.1.21] (inferred from 100% identity to xca:xccb100_0440)

Predicted SEED Role

"Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)" in subsystem Glycogen metabolism (EC 2.4.1.21)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UZL8 at UniProt or InterPro

Protein Sequence (528 amino acids)

>Xcc-8004.537.1 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) (Xanthomonas campestris pv. campestris strain 8004)
MVAMMPLHATTARLERSTMIPTSLKKSVRPRDARGRFIRHHERLPVALADTRGALFVVSE
MADFIKAGGLGDVAAALPRALRHRYDVRVLIPGYRAVLARAGKVEIVGRVLAHAALPACD
IGRIVQSDGLPIYILLSKELFERDGSPYVSTSGSEFEDNAIRFATLSHAAAQIAAGRAGL
GWRPRLLHLNDWPCALAAAYVRWSGGTTPCLLTIHNLAYQGLVPYSMAAALGIPAERVSE
LEFYGQMSFLRGGIVHADHVNTVSVSYAQQITGPAQGCGLDRLLAGRAAKGALSGIVNGI
DASWDPRTDEYLDSHFSVNHWQGRQANAAQVRKAFGLRESTGPLFAVVSRLVHQKGLDLI
CEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFL
LMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAEALRRCLERAF
RTFRLPSLLSAMRRAAMLRPSGWDVAGKKYISLYERTAATAPAVATVS