Protein Info for Xcc-8004.5356.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Fibronectin type III domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1742 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details PF03160: Calx-beta" amino acids 144 to 228 (85 residues), 28.1 bits, see alignment 4.5e-10 amino acids 242 to 340 (99 residues), 65.2 bits, see alignment 1.3e-21 PF05345: He_PIG" amino acids 364 to 448 (85 residues), 59.9 bits, see alignment 6.8e-20 amino acids 451 to 539 (89 residues), 47.7 bits, see alignment 4.3e-16 amino acids 542 to 627 (86 residues), 66 bits, see alignment 8.7e-22 amino acids 631 to 718 (88 residues), 55 bits, see alignment 2.4e-18 amino acids 722 to 806 (85 residues), 62.9 bits, see alignment 8e-21 amino acids 812 to 897 (86 residues), 51.4 bits, see alignment 3.1e-17 amino acids 901 to 985 (85 residues), 62.7 bits, see alignment 9e-21 amino acids 992 to 1076 (85 residues), 57.1 bits, see alignment 5e-19 amino acids 1080 to 1164 (85 residues), 52.5 bits, see alignment 1.4e-17 PF17963: Big_9" amino acids 1156 to 1236 (81 residues), 39.4 bits, see alignment 2.1e-13 PF03797: Autotransporter" amino acids 1470 to 1720 (251 residues), 173.2 bits, see alignment E=2.3e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC4201)

Predicted SEED Role

"Fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XCW8 at UniProt or InterPro

Protein Sequence (1742 amino acids)

>Xcc-8004.5356.1 Fibronectin type III domain protein (Xanthomonas campestris pv. campestris strain 8004)
VWTVNKQRRFLADATGGRARLVVMFVLFAMTLLAPGWAMAQASTYCPTLNATVVQGGSVQ
IDVTTCDGTGVDDIGVGWNGVQPAHGTIVVPNPSGAQGTQIVTYTHNGDNATSDTFPLED
GRSDIITVNITITPSQPTLSINDVSVNEGNAGTSNATFTVSLSQPAGAGGASFDIATADG
SAIAGVDYVASSLTGQTIPAGSSSATFTVLVNGDTLSEPNETFFVNVSNVSGAGVSDAQG
QGTIVNDDALPSLSIDDVSVNEGNSGTTTATFTVTLSAASGQTVSVNYASADGTATAGSD
YVARSGTLTFAPGTTAQGVAITVNGDTALEPNETFSVGLSGASNASIARATGAGTILNDD
VVVTVGPASLPAATAGSAYSQNLSASGGTAPYSFAVTAGALPAGLTLSAAGVLSGTPTAT
GSFNFTATATDSGGSPTSGNRAYTLTVAGATVTLPATSLPAGTAGQAYSGALNPATGGIP
PYTYAVTAGALPAGITLNGSSGALTGTPGSVGSFAFSVTATDSTSGTPSQGTRGYTLNIA
APPIVVAPSTLPAATRGTAYSQTLSASGGTAPYTYALASGALPAGLTLASNGTLSGTATV
EGSFNFTVTATDAGSFTANQAYSLTVAGPNLVLPASSLPAGTAGQAYSASITPATGGTAP
YSYALTAGALPTGVVVDVATGGLSGTPTVAGTFNFTLTVSDSTPSPAAQASRSYTLTIAA
PVIVVAPTALPAATRGTVYSQTLSASGGTAPYTYAVSAGNVPAGLTLASNGTLSGTATVE
GSFNFTVTATDANTFTASQAYAVTVAGPNLALPASSLPAGTAGQAYAATIAPATGGTAPY
SYALSAGVLPNGVVLDTATGGLSGMPTLSGTFNFTLTVTDSTPSPAAQASQSYTLSIAAP
VIVVAPTALPAATRGTAYSQVLTASGGTAPYTYEVNAGSAPAGLTLASNGTLSGNPTVEG
GFNFTVTATDANNFTASQAYVLTVASPNLALPASNLPAGTAGQAYTAAISPVTGGTAPYS
YALTAGALPSGVVLDAATGTLSGTPTVSGTFNFTLTVTDSTPSPAAQANQSYTLSIAGAT
LVPSQPTLPPAVRGTPYSQVLTATGGVAPYTYSVASGTLPAGLTLASNGVLSGTPTAEGS
TSFTIAVADAGNATATQAYTFTVSTAAPVAVADTAATMSDAAVTVPVTANDTGNITAIAI
ATAPTNGTAAVNGLELVYTPAAGFVGTDVVSYTVTGSGGTSAAATVTIAVNARPIAVSVT
AEAVPGAASQVDLTRDATGGPFVAAAVVAVLPASAGTATITQVGGAAAAAARTSGFVPAA
TAQASSPSFMLTFVANPAFVGQATVQFTLSNAFATSAAASVTFTVAPRRDPSVDAEVRGL
IDAQSESTRRFAKAQIDNFQRRLEATHRGGSTLSNAVTFQPTSHCRQADRGISAQPCSPD
TQDADNEFRDAPAMATGGTGGAQGQGDLGLWVGGAIRSGSLDRQANTNGVDFQTDGLSVG
ADYRLAPSLAVGAGLGWGRDDSDVGRNGSHSKATAYTMALYASFHPGKAFFFDTLVGYQL
LSYDLRRFVTDDASMAEGSRDGKQWIASLSSGADLQRGNLQITPYARVDVARATLDGYVE
DGIAPFALRYDDMDVATTTGNLGLRLEWRRDVAWGRLTPQVRVEYQRDFQGRGDATLGYA
DIIGGPVYRTGQNAFDRNRLMVGIGAALLTEQGLSTRLEYRGITDGDSGNDQTWMINLEK
KY