Protein Info for Xcc-8004.5353.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Exodeoxyribonuclease V beta chain (EC 3.1.11.5)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1372 TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 11 to 1265 (1255 residues), 698.9 bits, see alignment E=8.4e-214 PF00580: UvrD-helicase" amino acids 15 to 75 (61 residues), 59.9 bits, see alignment (E = 8.6e-20) amino acids 178 to 536 (359 residues), 86.3 bits, see alignment E=7.2e-28 PF13245: AAA_19" amino acids 18 to 75 (58 residues), 25.8 bits, see alignment (E = 2.6e-09) PF13361: UvrD_C" amino acids 659 to 726 (68 residues), 27.3 bits, see alignment 6e-10 amino acids 826 to 934 (109 residues), 49.9 bits, see alignment E=8.6e-17 PF12705: PDDEXK_1" amino acids 1053 to 1236 (184 residues), 24.5 bits, see alignment E=6.5e-09

Best Hits

KEGG orthology group: K03582, exodeoxyribonuclease V beta subunit [EC: 3.1.11.5] (inferred from 100% identity to xcb:XC_4288)

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XCV7 at UniProt or InterPro

Protein Sequence (1372 amino acids)

>Xcc-8004.5353.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) (Xanthomonas campestris pv. campestris strain 8004)
MSNSPVTDPYLHLPLHGVRLIEASAGTGKTFTLATLFTRLVVERQLRIGQILAVTFTEAA
TQELRRRIRERLALAATLVPDARAGAAATEAQTTLLPDASSAGVGAALAATEPTQTQASD
APSSAINMVLPATAPSDHLSHPPAQTPPQPHAPAAPDAVLTRAILTAHLATGTETPSALR
RRLQQAVEEIDLAAIFTIHGFCARVLREHALESGQAFAAPQLLANDRELLGEVAADLWRQ
RAADAAMADDLVALWPAGPTALASDLRALVQQPELLPAVAAPTPDPQPARQAAAQAVVAA
LRAHGDTAYDAVAAAFEHKIFDGRRARRPSFDKAFEQLWQGSAEAHWVLDDGGHLDKLLP
QRLREFCKDGAHDRVPCSPLFDALAVWQQADAVVRQWEGQRRIRLLHALRDDAVLQLAQR
KRQRRVQTYDDLVDGVARALQGPQAEALVQRLRAQYAIALVDEFQDTDDRQWQIFSRVFG
PEHAASGEAFAPDDDADFDNAAGTPPPRLLALIGDPKQAIYGFRGGDVQTYLAAATTAQR
APPLEHNFRSRPGVLAAIDALYAQAGYAEAFLTEGIAFHPVQPGTKRSDADLQRDDAAAP
ALTLWRAPAPPPPAKGKPKPWSAGRARELCTAACVAAIRGWLAGGRDGSASINGRPVQAG
DIAVLVRSHGEATRIQQALGAVGIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLR
AALATVLIGEDAAAIAALEHDGERHRRWQQQALDWRERWQRGGPLALVGDLGATHGQRLL
ALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWLARRIANADDNDETQQLRLESDARR
VQIVTLHKSKGLEYPLVFLPYIGIGRADKSPGRHCVVHAPPHGRQLHWNTSKWSADDTAS
WSTAETAWKHEQRAEDARLLYVGLTRAEHALWIATGAFHQHERTALAPMLRDPAALQASA
GAGVIALDDTAPPATLPRLPADDAVQVPAARLAQRHVVPDWWVYSFTQLANADAGSDPMA
SATLASSGGSDEPPASEPVSAPAEVEAFDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQ
PAPEGQAAAILEALQRGGYAQDELDDGLAMLTRLVGHTLTVTLPEGTCLAAVPEPQRRNE
MEFHFAMRPTRVDALLALLHRFGVVTERQAFGARQRLEGLMTGLIDLTYCADGRWYVLDY
KSNRLPAYDPDALARAMAHSEYELQALIYTIALHRWLRFRLGASYDYARDFGGVRYLFCR
GLDAARNPAADSSSILGSGSGSGSDSDSDSVNGASSVSGSDPASDAMSDTPAPNTPVPGI
YAWRFDPALVQALDALFAGNPTEPLSSDALKPLSPRERGWGEGTSTTGTPTP