Protein Info for Xcc-8004.528.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 821 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 209 to 231 (23 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details amino acids 332 to 350 (19 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details amino acids 418 to 443 (26 residues), see Phobius details amino acids 449 to 474 (26 residues), see Phobius details amino acids 495 to 519 (25 residues), see Phobius details amino acids 553 to 575 (23 residues), see Phobius details amino acids 595 to 614 (20 residues), see Phobius details amino acids 620 to 647 (28 residues), see Phobius details PF12607: DUF3772" amino acids 135 to 195 (61 residues), 65.8 bits, see alignment 3.5e-22 PF00924: MS_channel_2nd" amino acids 637 to 702 (66 residues), 78.5 bits, see alignment E=5e-26 PF21082: MS_channel_3rd" amino acids 711 to 792 (82 residues), 32.3 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_0415)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3J9 at UniProt or InterPro

Protein Sequence (821 amino acids)

>Xcc-8004.528.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
VSEFRVVPTAHRGVVRRLLLLVALWMVCVGAAVAQDEDTLQENAQAQLDSMQKVLKQAEA
GLDKSDKDQLGKLTDEVTGAQRQAQDLVRTLDPPLKELNVRLEALGVKQAGEPKDLTKQR
DSLAKERDGLDAESKRAMLLVSDAKDLADRLERERVQRFSVQLSTRVASPLSPAFWNQIA
QQWPDDRARLQALSARTVQMVQAGTAANGVGGLITGVLIALLLALPLRIFLRHLGRRYAA
SRAPGGRLRRSGLALWFLLIGTLTLGVAAFVLVESIRSLGQVAEDLDQLLTGFVAVSLVA
AFVGSLSASLLMKHQPSWRLFPLDDATVDRLRVHCLATAAVIWCSGMGSKINEAAGSSPA
LNTATDAVAALLYAGLILSALAGLSLSLRAHAANAGVVDPDSDAPPPVVSRGGGFIVLIR
LLGHLAVIFALIAALFGYLNLALFVERQIIWITLVCSLLGLLVVFADDLMTWLFKPDGRF
SRALAHALSIGSGRLVQLGLLISAAARVVLVLLGIALLLTPYGANLSVVADWAENITHGI
NIGKELVITPGDVFRALCVFLLGMGVVHVVQQWLLNTYLPKTELDAGARNSISTVARYLG
WLIVVVWGLTALGLDLKRLALVLSALSVGIGFGLQAITQNFVSGLILLAERPVKIGDWVR
IGDQEGDVRKISVRATEIQVGDRSTLIVPNSELITKSVRNMTLSNPLGRVQLQFSVPLET
DVAKVRDMLLELFAEHTKVLAEPAPEVFIDSLAGGHVNFNSFAYVRSPRDSYGVRSELFF
ALLQRMDTAGIALQSPQEIRFSRAGAAVARDAGDATPASES