Protein Info for Xcc-8004.5184.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: sodium:galactoside family symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 117 to 141 (25 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 239 to 263 (25 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 304 to 322 (19 residues), see Phobius details amino acids 327 to 347 (21 residues), see Phobius details amino acids 380 to 401 (22 residues), see Phobius details amino acids 410 to 435 (26 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 19 to 452 (434 residues), 396.4 bits, see alignment E=7.3e-123 PF13347: MFS_2" amino acids 21 to 439 (419 residues), 303.9 bits, see alignment E=1.6e-94 PF07690: MFS_1" amino acids 33 to 386 (354 residues), 67.5 bits, see alignment E=1e-22

Best Hits

KEGG orthology group: K03292, glycoside/pentoside/hexuronide:cation symporter, GPH family (inferred from 100% identity to xca:xccb100_4279)

Predicted SEED Role

"sodium:galactoside family symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XE59 at UniProt or InterPro

Protein Sequence (460 amino acids)

>Xcc-8004.5184.1 sodium:galactoside family symporter (Xanthomonas campestris pv. campestris strain 8004)
MTSSPATPPPLAPLRLREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMIL
LTKIADAIADPAMGALADRTRSRWGKFRPYLLWGAVPMAVTGVLAYTTPALDQNGRMWWA
TISFLVMMLAYTVVSIPYSALSGVITADSNQRTSLISLRFIAAFAGTTLVNYCTMDLVKW
FGGGNDALGWQRTMMLYGAVAVALFVTVALTTRERVQPPPQQRSPIRQDIADLLHNRPWC
VLFVLSLIIMITIVMRGGAGVYYLKYYVQRPELTGLFLGGYSVSLAVGAAITPLLTRHWD
KRTLMTALMAVVGLLSCLMFFIPADMVWAIFALNMLIGVALGPKSPLAFSMYADSADYTE
WSTGRRATAMTFAAATFSQKLGGALASAGIAWVLAGMGYVANSAQSQASLTGIVLLLTVI
PGVVALLAAWTMRFYPLDDGLLRRIQLELAARKRDEPEHP