Protein Info for Xcc-8004.515.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Manganese superoxide dismutase (EC 1.15.1.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00081: Sod_Fe_N" amino acids 31 to 114 (84 residues), 97.9 bits, see alignment E=3.8e-32 PF02777: Sod_Fe_C" amino acids 125 to 227 (103 residues), 140.4 bits, see alignment E=1.9e-45

Best Hits

Swiss-Prot: 58% identical to SODM_ACIAD: Superoxide dismutase [Mn] (sodA) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K04564, superoxide dismutase, Fe-Mn family [EC: 1.15.1.1] (inferred from 100% identity to xcb:XC_0407)

MetaCyc: 44% identical to superoxide dismutase (Fe) (Escherichia coli K-12 substr. MG1655)
Superoxide dismutase. [EC: 1.15.1.1]

Predicted SEED Role

"Manganese superoxide dismutase (EC 1.15.1.1)" in subsystem Nitric oxide synthase or Oxidative stress (EC 1.15.1.1)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.15.1.1

Use Curated BLAST to search for 1.15.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X2Z9 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Xcc-8004.515.1 Manganese superoxide dismutase (EC 1.15.1.1) (Xanthomonas campestris pv. campestris strain 8004)
MNCRSIKALGLSALLALSNIAVAADAPKVAFSLPALPYATNALEPAIDTQTMEIHHARHH
KAYVDNLNNKVEDYPALSTTSVEDIQAHISLYDAAVRNNAGGHYNHSLFWTLMAPAGQGG
TISPALKAKLAQSFGSEEAFKTKFSEAATKIFGSGWAWLIVKPDGSLAITTTSNQDNPLM
DVVSDRGTPLLALDMWEHAYYLHYQNKRADYIKAWWSVVNWTEVNARFGAAAKR