Protein Info for Xcc-8004.5108.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Uncharacterized protein ImpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 PF06812: ImpA_N" amino acids 2 to 61 (60 residues), 48.5 bits, see alignment E=4.4e-17

Best Hits

KEGG orthology group: K11902, type VI secretion system protein ImpA (inferred from 100% identity to xcc:XCC4023)

Predicted SEED Role

"Uncharacterized protein ImpA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XCE0 at UniProt or InterPro

Protein Sequence (250 amino acids)

>Xcc-8004.5108.1 Uncharacterized protein ImpA (Xanthomonas campestris pv. campestris strain 8004)
VRIASKLGAAWLRLRGLPGWADALALIHGLLGQHWDSVHPQLDADDDNDPTARVNALVGL
SDPMGLLGALRTTAFVQSPRLGRFSLRDLRAANGSLKLAEGQAVPSLAEIEACCLDCPLD
TLAASAKAITDAAATARAIDAWLTEQLGTAAPDLRPLLADLRDLERFVLPHWQARQGSTG
EAADSTEHSGDDGATAAGSPTRRTGESPARTMSCGGWRRSAPITPATNRPARCRCCCGAR
SDWLAATSWR