Protein Info for Xcc-8004.5085.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: FIG021862: membrane protein, exporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 253 to 271 (19 residues), see Phobius details amino acids 278 to 299 (22 residues), see Phobius details amino acids 305 to 322 (18 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details amino acids 421 to 442 (22 residues), see Phobius details amino acids 638 to 657 (20 residues), see Phobius details amino acids 664 to 684 (21 residues), see Phobius details amino acids 690 to 710 (21 residues), see Phobius details amino acids 722 to 743 (22 residues), see Phobius details amino acids 749 to 770 (22 residues), see Phobius details PF03176: MMPL" amino acids 190 to 414 (225 residues), 22.5 bits, see alignment E=2.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_4094)

Predicted SEED Role

"FIG021862: membrane protein, exporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XCF7 at UniProt or InterPro

Protein Sequence (788 amino acids)

>Xcc-8004.5085.1 FIG021862: membrane protein, exporter (Xanthomonas campestris pv. campestris strain 8004)
MAFELNANRRIGLALLWLALLAVAGFWLSETLKVSGDLRKFMPAPRTPAQKLLIEELGEG
PGSRLLLMSLSNSDPATLAAQSRALYRTLAAQPDLFELVGNGGSAGLEAIPQRLLPYRYL
LSDSFDAAPLDAAALETALQARVQDLGSPAGAMVEPLLPRDPTLEVLHLAETLQPAAAPQ
TRDEVWFDRAGTSALLVVQTRAAGFDPTGQQLAYDAVQAAFAKVSAGTATRMTLTGPGAF
AVEIAARTQGEAQWIGTLDTVGLVLLLLVAYRSWKIPVLGVLPLASAGLAGLGAVALLFD
GVHGITVAFGFTLIGVVQDYPIHLFSHQRPGLDPRANARHLWPTLATGVVSTCIAYVTFL
FSGVDGLRQLAVFTIAGLATAAVTTRWLLPWLIDPAPRDYADSRLLAALWRAIARLPRPR
LSLAVIAVVGIAVIAFAPGQFWQNDLSKLTPVPPKALAQDTHLRQELGAPDVRYVLALSA
PSDEAALQASERLRPRLDALVREGALAGYDMAARYLPSAKTQQARQAALPDAAQASALLQ
QAVAATPFRSDVFAPFLQDLQTAKQAAPLAPKDLAGSPLATSVGGLLLGRSDRSTALVSL
TGLRDPAVIASAVQGSGAQLLDLKEASESLVAAYRGRVLGALLLAALLLAATVAIALRSP
RRIVRVLLPMALTTVLILAILRGMGVELNLFHLIALILAAGLGLDYALFFDHAGDDHADQ
LRTLHALIVCSLMTLLVFALLAASSIPVLRAIGSTVALGVLFNFILALLVSREPALERPA
GEVTDART