Protein Info for Xcc-8004.5034.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Pass1-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF13621: Cupin_8" amino acids 23 to 262 (240 residues), 244 bits, see alignment E=1.2e-76

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC3965)

Predicted SEED Role

"Pass1-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XC91 at UniProt or InterPro

Protein Sequence (337 amino acids)

>Xcc-8004.5034.1 Pass1-related protein (Xanthomonas campestris pv. campestris strain 8004)
MPAEPRPIPEVHGLDPLQLDPALLRSTTPLVLRGLVRDWPLARAGAQSAQAAAQYLRRFD
RGEAVVAQVGPPEIAGRFFYNADMSGFNFRPERVPLAVVLETLLRDLEVAQPPAIYVGST
TLDTYLPGLRADNPITLPQAEPLASIWIGNRTRIAAHQDLPDNLACVVAGRRRFTLFPPE
QLANLYIGPLDLTPAGQPVSLVDITAPDLERFPRYAQALEHALVADLEPGDAVFMPSMWW
HHIQALDGFNVLVNFWWRQSPAYMDSPMNALMLALLTIRDLPAEQRATWQEVFRHYVFDA
DADTAAHLPEAARGVLAPMDDARARALRARLLQRLNR