Protein Info for Xcc-8004.5007.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Sensor protein PhoQ (EC 2.7.13.3)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 signal peptide" amino acids 1 to 45 (45 residues), see Phobius details transmembrane" amino acids 184 to 203 (20 residues), see Phobius details PF02518: HATPase_c" amino acids 360 to 469 (110 residues), 62 bits, see alignment E=7.1e-21

Best Hits

KEGG orthology group: K07637, two-component system, OmpR family, sensor histidine kinase PhoQ [EC: 2.7.13.3] (inferred from 100% identity to xcc:XCC3942)

Predicted SEED Role

"Sensor protein PhoQ (EC 2.7.13.3)" in subsystem Lipid A modifications (EC 2.7.13.3)

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3

Use Curated BLAST to search for 2.7.13.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XDR5 at UniProt or InterPro

Protein Sequence (471 amino acids)

>Xcc-8004.5007.1 Sensor protein PhoQ (EC 2.7.13.3) (Xanthomonas campestris pv. campestris strain 8004)
VSGRSKWYRRWRPRSLQARQLLAASLSLVAFLALAGYALDVAFADTAEKNLRERLKNYAN
AYTYNIDFVRDGSLYLGGQPPDPRFDVPGGGLYVEVVRPDESYTSVSAEGPSIPHGRMLE
PRQEEFIGPLEMTQIDGSPGQVYRYGLGVSYVERENGGEIPYTIYVMEDARSMGAQLRVF
RGAVWFYLGSAGVVLLVLQAFILQWSLRPLRRVINELTKVQRGEIQRMSEQHPRELEPLT
ESINAFIESERDNLDRQRNTLADLAHSLKTPLAVLRTQLDSGASERDLHEEMDVQLRRMN
DLVSYQLARAASSGHKLFAAPLPIEPTAEEIVRGLEKVYAAKGVLCEFDISPDARFHGEP
GDLQELLGNLLENGFKWARSRVLLTAQPGPTTGSRRAGMILSVEDDGPGIAPEDVAKILQ
RGVRGDERVQGHGIGMSIVQDLIKAYRGELQVLRSQELGGARFEVTLPPGL