Protein Info for Xcc-8004.4897.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: DNA repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF20582: UPF0758_N" amino acids 21 to 98 (78 residues), 89.4 bits, see alignment E=1.3e-29 TIGR00608: DNA repair protein RadC" amino acids 29 to 242 (214 residues), 214.6 bits, see alignment E=7.2e-68 PF04002: RadC" amino acids 122 to 241 (120 residues), 148.6 bits, see alignment E=8.3e-48

Best Hits

Swiss-Prot: 100% identical to Y3860_XANCP: UPF0758 protein XCC3860 (XCC3860) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 100% identity to xca:xccb100_4044)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UPP0 at UniProt or InterPro

Protein Sequence (243 amino acids)

>Xcc-8004.4897.1 DNA repair protein RadC (Xanthomonas campestris pv. campestris strain 8004)
MPPFGLIGVGDEHRQSGHMHINDWPTDERPREKLLARGAAVLSDAELLAIFVGSGLRGQD
AVRTARDLLHRHGPLRCLLDRPAKALARLPGLGPASACKLSAALELANRHLLSDLERGEA
LSDPSSVGRYFSQRLRARNYEVFAALFLDSRHRAIAFEELFTGTIDAAEIHPREVVRRAL
LHNAAAVVVGHNHPSGNPEPSEADRAVTQRLLQALGLVDIRLLDHFVIGDGRPVSLAERG
WVP