Protein Info for Xcc-8004.488.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 634 TIGR00136: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA" amino acids 8 to 627 (620 residues), 894.9 bits, see alignment E=1.3e-273 PF00890: FAD_binding_2" amino acids 9 to 41 (33 residues), 21 bits, see alignment (E = 4.5e-08) PF12831: FAD_oxidored" amino acids 9 to 194 (186 residues), 37.2 bits, see alignment E=5.7e-13 PF01134: GIDA" amino acids 9 to 403 (395 residues), 560.7 bits, see alignment E=4.9e-172 PF21680: GIDA_C_1st" amino acids 466 to 562 (97 residues), 78.4 bits, see alignment E=1.4e-25 PF13932: SAM_GIDA_C" amino acids 567 to 622 (56 residues), 85.4 bits, see alignment 4.6e-28

Best Hits

Swiss-Prot: 100% identical to MNMG_XANC8: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG (mnmG) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K03495, glucose inhibited division protein A (inferred from 100% identity to xcc:XCC0377)

MetaCyc: 66% identical to 5-carboxymethylaminomethyluridine-tRNA synthase subunit MnmG (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UZP9 at UniProt or InterPro

Protein Sequence (634 amino acids)

>Xcc-8004.488.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (Xanthomonas campestris pv. campestris strain 8004)
MSDSFYRYDVIVIGGGHAGTEAALAAARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHL
VKEIDALGGAMAKAADLAGIQWRTLNASKGPAVRATRCQADRNLYRSAIRRIVEAQPNLT
VFQAAVDDLIIHNGAAEGDSVRGVITQTGLRFEATAVVLTAGTFLAGKIHVGETQYAAGR
MGDPPATTLAARLRERPFAIDRLKTGTPPRIDGRTLDYTMMDEQPGDDPLPVMSFMGQVS
DHPTQVSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGPRYCPSIEDKVVRFADKTSHQ
IFVEPEGLDVTEIYPNGISTSLPFDVQLALVRSIRGFAQAHITRPGYAIEYDFFDPRGLK
ASLETKAVGGLFFAGQINGTTGYEEAAAQGLLAGLNAARQAQALPAWSPRRDEAYLGVLV
DDLITHGTTEPYRMFTSRAEYRLQLREDNADLRLTGVGRAMGLVDDARWARFSSKQEAVQ
RETARLSALWATPGNALGREVVDTLGVPMSRETNVLDLIKRPELSYAALMRVPTLGPGVD
DAQVAEQVEIGVKYAGYLNRQRDEIARQQRHETTPIPEGFDYAGVRGLSMEVQQKLERVR
PQSIGQAQRIPGMTPAAISLLLVHLERARRSQVA