Protein Info for Xcc-8004.4819.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 200 to 220 (21 residues), see Phobius details amino acids 232 to 252 (21 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details amino acids 327 to 346 (20 residues), see Phobius details amino acids 352 to 374 (23 residues), see Phobius details amino acids 386 to 405 (20 residues), see Phobius details amino acids 411 to 428 (18 residues), see Phobius details PF13520: AA_permease_2" amino acids 16 to 405 (390 residues), 167.5 bits, see alignment E=4.9e-53 PF00324: AA_permease" amino acids 23 to 409 (387 residues), 112.3 bits, see alignment E=2.5e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC3809)

Predicted SEED Role

"Amino acid permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XBU4 at UniProt or InterPro

Protein Sequence (433 amino acids)

>Xcc-8004.4819.1 Amino acid permease (Xanthomonas campestris pv. campestris strain 8004)
MSSQGNESPALVRAVSRWQIVGLSINDVIGSGIYLLPAATAALLGPMSLWAVMLAGLAVA
LLVLCYAQAASYFDTPGGSYLYTREAFGPFTGFQIGWMIWLTRISSAAALSNGLADAVAR
FWPAAGSDGWERLLVVVGSLGLLTAINVIGVKSAARTGVALVIGKLVPLLLFVAIGLFYV
DWSWAFAGSTPDLRDLGNLGEAALLLLFAYAGFENIPAAAGEYRNPRRDVPFALITMIVT
VTLIYAAVQVVAQGTLPNLAASPTPLADAASRFGGEALALILTVGATISILGTTSNTVML
GPRFLFALAQDGYGPALLARVHPRFHTPAAAVLTQGVLSLALALSGSFTQLALLSMVTRL
FAYIGTAAAVIVLARRYRARTDALRLPGGPLIPIAALLLSLGLLASASWQNLAAAGLALL
VGCVFYLFPRKPA