Protein Info for Xcc-8004.4743.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Peptide deformylase (EC 3.5.1.88)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01327: Pep_deformylase
  • amino acids 4 to 155 (152 residues), 182.4 bits, E=2.3e-58
• TIGR00079: peptide deformylase
  • amino acids 6 to 162 (157 residues), 175.8 bits, E=2.6e-56

Best Hits

Swiss-Prot: 100% identical to DEF2_XANCP: Peptide deformylase 2 (def2) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K01462, peptide deformylase [EC: 3.5.1.88] (inferred from 100% identity to xca:xccb100_3930)

MetaCyc: 56% identical to peptide deformylase (Escherichia coli K-12 substr. MG1655)
Peptide deformylase. [EC: 3.5.1.88]

Predicted SEED Role

"Peptide deformylase (EC 3.5.1.88)" in subsystem Bacterial RNA-metabolizing Zn-dependent hydrolases or Conserved gene cluster associated with Met-tRNA formyltransferase (EC 3.5.1.88)

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.88

Use Curated BLAST to search for 3.5.1.88

Sequence Analysis Tools

See A0A0H2XDF0 at UniProt or InterPro

Protein Sequence (170 amino acids)

>Xcc-8004.4743.1 Peptide deformylase (EC 3.5.1.88) (Xanthomonas campestris pv. campestris strain 8004)
MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR
FMVIDVSEEKDAPQVFINPEIVTRQGEQVYQEGCLSVPGIFADVSRADAITVRYLDRQGQ
PQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKLRKHVA