Protein Info for Xcc-8004.4603.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Methionine ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 PF00005: ABC_tran" amino acids 21 to 169 (149 residues), 125.6 bits, see alignment E=3.4e-40 PF09383: NIL" amino acids 262 to 331 (70 residues), 67.7 bits, see alignment E=1e-22

Best Hits

Swiss-Prot: 100% identical to METN_XANCP: Methionine import ATP-binding protein MetN (metN) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K02071, D-methionine transport system ATP-binding protein (inferred from 99% identity to xca:xccb100_3815)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UQD2 at UniProt or InterPro

Protein Sequence (335 amino acids)

>Xcc-8004.4603.1 Methionine ABC transporter ATP-binding protein (Xanthomonas campestris pv. campestris strain 8004)
VIQFQRLHKSYTVDGRQIVALHPLDLRIGPGEVFGIIGHSGAGKSTLIRLINRLEEPTGG
RLLIGDEDVTALNSTGLRALRRRVGMIFQHFNLLSSRTVAGNVAFPLELAGTPRAEIDAR
VAELLARVGLEQHATKYPAQLSGGQKQRVGIARALATRPQILLCDEATSALDPQTTASVL
QLLAQINRELGLTIVLITHEMEVIRRVCDRVAVLDAGKLVETGPVTEVFLHPQHPTTRRF
VSEAEHVDEAELHRDFEAVGGRIVRLTFLGNGTYEPVLGRIARETGVDYNILSGRVDRIK
DTPYGQLTVALTGGDQNAARAGFVAAGVHVEDLRV