Protein Info for Xcc-8004.4425.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: General secretion pathway protein L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 transmembrane" amino acids 213 to 233 (21 residues), see Phobius details PF05137: PilN" amino acids 287 to 358 (72 residues), 60.3 bits, see alignment E=7.6e-21

Best Hits

Swiss-Prot: 100% identical to GSPL_XANCP: Type II secretion system protein L (pefL) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K02461, general secretion pathway protein L (inferred from 100% identity to xca:xccb100_3688)

Predicted SEED Role

"General secretion pathway protein L"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XB23 at UniProt or InterPro

Protein Sequence (373 amino acids)

>Xcc-8004.4425.1 General secretion pathway protein L (Xanthomonas campestris pv. campestris strain 8004)
MTAWRDTLGRIGVRAMPGAGGFWRWWQQSLLAWLPQRWQWQLGLSQSRLLLQLDGEALQL
LRQRDQTSDTVASLPWPVQPQEVNALLPTALEGLPQHWLLPASHALRRPLRLPAAAAARL
QDVARFEIDRQTPFTADQVYFDARVLDVREDGQLDAELVVVPRRMIDGPAGVPEAWSNAL
SGIDVADARGAPLGVNLLPPARRLRRSDPMQRWNLLLAVAALVLLAVAGWLLLDNRRQAA
DDLRAQVQANAGRARQVAAERQQLLELVEGAAFFQEQRATRPTSVEIWDELSRRLPSGTY
LEKFSVEGGQLQLIGLSKEASSLVRRLEGSPLWHTPSLTGVLQSDAGRNVDRFTITAELA
GPDAKEAADAAQR