Protein Info for Xcc-8004.4420.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: General secretion pathway protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR02517: type II secretion system protein D" amino acids 96 to 742 (647 residues), 653.4 bits, see alignment E=1.7e-200 PF21305: type_II_gspD_N0" amino acids 97 to 162 (66 residues), 41.8 bits, see alignment E=1.2e-14 PF03958: Secretin_N" amino acids 192 to 251 (60 residues), 35.9 bits, see alignment 1.1e-12 amino acids 258 to 325 (68 residues), 35.9 bits, see alignment E=1e-12 amino acids 332 to 479 (148 residues), 40.1 bits, see alignment E=5.3e-14 PF00263: Secretin" amino acids 557 to 733 (177 residues), 156.3 bits, see alignment E=8.5e-50

Best Hits

Swiss-Prot: 100% identical to GSPD_XANCP: Secretin XpsD (xpsD) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K02453, general secretion pathway protein D (inferred from 100% identity to xcb:XC_3563)

Predicted SEED Role

"General secretion pathway protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XAY6 at UniProt or InterPro

Protein Sequence (759 amino acids)

>Xcc-8004.4420.1 General secretion pathway protein D (Xanthomonas campestris pv. campestris strain 8004)
MSERMTPRLFPVSLLIGLLAGCATTPPPDVRRDARLDPQVGAAGATQTTAEQRADGNASA
KPTPVIRRGSGTMINQSAAAAPSPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYV
IAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGRYNIVPADQALAGTVAPS
TASPSAARGFEVRVVPLKYISASEMKKVLEPYARPNAIVGTDASRNVITLGGTRAELENY
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKISADLEKVFGEQSKTPSAGMFRFMPLENANA
VLVITPQPRYLDQIQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRGNGGNS
GPSLVPGGVVNMLGNNSGGADRDESLGSSSGATGGDIGGTSNGSSQSGTSGSFGGSSGSG
MLQLPPSTNQNGSVTLEVEGDKVGVSAVAETNTLLVRTSAQAWKSIRDVIEKLDVMPMQV
HIEAQIAEVTLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSN
GVAWTFLGKNAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLG
SDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAAC
NVDINTRRVKTEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDR
REVIVLITPSIVRNPQDARDLTDEYGSKFKSMRPMDVHK