Protein Info for Xcc-8004.4415.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Ferrichrome-iron receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF07715: Plug" amino acids 63 to 161 (99 residues), 40.9 bits, see alignment E=2.7e-14 TIGR01783: TonB-dependent siderophore receptor" amino acids 65 to 722 (658 residues), 537.1 bits, see alignment E=3.6e-165 PF00593: TonB_dep_Rec" amino acids 233 to 688 (456 residues), 146.9 bits, see alignment E=1.8e-46

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to xcb:XC_3559)

Predicted SEED Role

"Ferrichrome-iron receptor" in subsystem Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2XCL3 at UniProt or InterPro

Protein Sequence (722 amino acids)

>Xcc-8004.4415.1 Ferrichrome-iron receptor (Xanthomonas campestris pv. campestris strain 8004)
MYAPCPSLLSRRPLALALALCITLPALAQQQPDGAAVQLDAVNVRGERADAATTLSGFGA
TSLLDAPASIAVIERQQLLDRQARVLSEVLRADASAGDAYAPIGYYENFVLRGYSLNAAN
SYRINGLSAVGEQSIALENKQQVQILKGLAGLQSGVNEPAGLIDYRTKRPEHVRSVTLGT
DEQGSRYIAADLGDWFDADRTLGVRVNAAREDFRSYVDHADGYRNFLSLAGDWKPTAQSL
LQVDVEYQHRQQRSVPGYQLLGGTQVPRNIDVHRLLGYQPWSRPVEMDSLNAQLRYTYQF
NEVWRASVEASRSRSTINDFSAFAWGCYGAASCADIATPNFFSAQGEYDVYDYRSPDDTR
VHDQLRASLDGRVTTGALDHQLSIGADWLRRTIDRYGSVNEFVGSGSIDRDPEVFAQTDV
ALDPKQRRLDSRQRALVVADRIGFGSQWELSLGARYVRLDERAFDRDGVLERRTRKDALL
PQAALLFKPQQQVTVYASYAKSLAAGGTAPWFADNADEILTPTNAYQLETGAKWQLQGVR
LGAAVFDIRQAYQFTQPQADGGLLYVQQGRLHNRGLELSADGAVTGQLQLFASVAAIRAR
AEDTGIAAYEGHQAINVPKLRASVQADYRVPGIDGLALLAGVQYSGRKFADRLGSASVPA
YAVPNLGTRYATTLGGLATTWRLNVDNVFDKRYWRDAGEYQGDAYLFPGAPRTARLTVQV
DF